Hi all, Is there an easy way in coot to identify all cis- peptide bonds in a structure? In section 7.8.4 of the manual it states that "Unexpected CIS peptide bonds show up red" in the omega analysis graph... I guess all my ones are 'expected' (i.e. Xaa-Pro) as they are not red. I tried opening a file then immediately saving it (as I thought mmdb added CISPEP cards to output PDB files these days) but no joy.
Am I missing something simple? Stephen P.S. I'm running coot 0.5.2 Northumberland (revision 1691) on ubuntu 8.10 -- Dr Stephen Graham Nuffield Medical Fellow Division of Structural Biology Wellcome Trust Centre for Human Genetics Roosevelt Drive Oxford OX3 7BN United Kingdom Phone: +44 1865 287 549
