Bottomley, Matthew wrote:
Dear Cooters,
Is WinCoot able to handle glycosylated Asn residues? If I load my
current PDB file that contains an Asn with an N-linked NAG modification
the NAG does not appear bonded to the Asn side-chain (whereas in Pymol
this connection is drawn). The Asn and NAG have different residue
numbers - is that the source of the problem? Any good work-arounds?
Dear Matthew,
Yes, this is a know issue, there is no work-around (other than the
gimp/photoshop :). It is due to be fixed, not that that helps you now.
But note that the bond drawing algorithm is different to the restraint
generation - so even though the bond is not drawn, can still be used in
sphere refinement.
Paul.
