Evan Kantrowitz wrote:
Hi All,

I am having problems rotating about the chi angles of an unnatural amino acid that is in my structure.


Urgh.  Chi angles having been undergoing a big rewrite this week...


I have modified the .cif file as indicated below

_chem_comp_tor.period
 HCE      chi1     N      CA     CB     CG       175.000   20.000   3
 HCE      chi2     CA     CB     CG     C4       175.000   20.000   3
 HCE      chi3     CB     CG     C4     C9       175.000   20.000   2

If I go into Edit Chi angles mode, Coot recognizes the chi1-3 no problem. However, if I rotate the chi1, or chi2 the section towards the backbone rotates and separates (eg the peptide bonds on either side break). Is there somewhere else I need to do in order to indicate to Coot that this is a amino acid linked into the structure and not a ligand? Any help would be appreciated.

Try clicking on the N atom when picking the residue.

Paul.

Reply via email to