-------- Original Message -------- Subject: Re: fit RNA/DNA Date: Sat, 14 Nov 2009 01:59:14 +0000 From: Paul Emsley <[email protected]> To: ray brown <[email protected]> References: <listserv%[email protected]>
ray brown wrote:
Is there any way to real space refine RNA/DNA base-pairs while constraining the W-Crick H-bond distances and stop them blowing up? I cannot find any FIT RNA/DNA that would work like the FIT PROTEIN command? Has anyone come up with a work around for automated RNA/DNA model real space refinement that does not destroy the double helical geometry? Please send me your ideas and suggestions.
There is no way of doing this sadly. It is on the list - you are not the only one who want this.
The best you can do now is rigid-body refine chain-fragment pairs. Paul.
