Le 14 janv. 2010 à 17:39, Paul Emsley a écrit : > Miguel Ortiz Lombardia wrote: >> Dear all, >> >> Is there a way to ask Coot to write pdb coordinate files with nucleic acid >> residue names in 'standard' PDB format? That is: DA, DC, DG, DT, A, C, G, >> T... >> > > No. It's on the list. I will use the PDB-approved nomenclature. >
Right, thanks Paul. For the time being, I'm using this sed command (for DNA): sed -e 's/ \(.\)d \(.\)/ D\1 \2/' file.pdb > edited_file.pdb Best, -- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR6098) CNRS, Universités d'Aix-Marseille I & II Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel: +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: [email protected] Web: http://www.pangea.org/mol/spip.php?rubrique2
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