Le 14 janv. 2010 à 17:39, Paul Emsley a écrit :

> Miguel Ortiz Lombardia wrote:
>> Dear all,
>> 
>> Is there a way to ask Coot to write pdb coordinate files with nucleic acid 
>> residue names in 'standard' PDB format? That is: DA, DC, DG, DT, A, C, G, 
>> T...
>>  
> 
> No.  It's on the list.  I will use the PDB-approved nomenclature.
> 

Right, thanks Paul.

For the time being, I'm using this sed command (for DNA):

sed -e 's/ \(.\)d \(.\)/ D\1 \2/' file.pdb > edited_file.pdb

Best,


-- Miguel

Architecture et Fonction des Macromolécules Biologiques (UMR6098)
CNRS, Universités d'Aix-Marseille I & II
Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
Tel: +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: [email protected]
Web: http://www.pangea.org/mol/spip.php?rubrique2





Attachment: smime.p7s
Description: S/MIME cryptographic signature

Reply via email to