Norman Zhu wrote:
This email is a continuation of an inquiry I post last week. The
problem I had and still is i can't use the <real space refine
zone> and <regularization zone> functions on a DNA structure. Whenever i
ask the computer to fit the bases into the electron density it would give me
a solution that would only satisfies the needs of the purine and pyrimidine
bases
but at the expense of the sugar and phosphate back bone.
The devil's in the detail. Do you atom names in the pdb file match the
atom names in the Refmac dictionary? Perhaps you use prime names and
the dictionary uses * names. Upgrading to a recent pre-release should
help with the diagnostics.
Paul.
