Norman,
you can display the symmetry mates of the misplaced domain two in coot
and then choose the one which is in the same molecule as domain one.
Write the symmetry mate coordinates out in coot and edit into your
coordinate file to describe your assymmetric unit with domain one.
regards,
Pirkko Heikinheimo
Norman Zhu wrote:
Hello everyone
I am currently working with a protein shaped like dumbbell, with two
well folded domains connected by a fixable linker in meddle. Anticipating
movement at the hinge I asked Phaser to treat these two domains as separate
entities. Phaser provided me with a solution but it placed one of the
domain in the neighboring molecule. Does anyone know a convenient way to
move that domain back into the same asymmetric unit?
Norm
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Pirkko Heikinheimo
Structural Biology and Biophysics,
Institute of Biotechnology,
P. O. Box 65,
FIN-00014 University of Helsinki, Finland
Visit address:
Biocenter 3, room 4320
Viikinkaari 3, 00790 Helsinki, Finland
http://www.biocenter.helsinki.fi/bi/xray/pirkko
e-mail: [email protected]
phone: 358-(0)9-191 58957
gsm: 358-(0)50-354 0713
fax: 358-(0)9-191 59940
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