Per SUPERPOSE manual, they are.  I believe the distances for individual
residues are for Ca atoms too.

On Fri, 2010-07-02 at 14:17 +0200, Tim Gruene wrote:
> Dear all,
> 
> which atoms are used for the calculation of an SSM superposition in coot? I
> suppose they are only the C-alpha atoms but would like to have a confirmation.
> 
> Ta, Tim
> 

-- 
Coot verendus est

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