When adding residues to the N- or C-terminus, it may be desirable that
the B-factors of the new residue match that of the previous terminal
residue.  Right now it uses defaults (20 for main chain, 30 for side
chain) which are sensible fir a well-ordered model, but this causes
problems with the subsequent refmac run for somewhat disordered regions
where <B> may be significantly higher.  

The current workaround is to modify residue properties manually (or keep
resetting the defaults).  Naturally, the wisdom of adding extra residues
with <B>~100 is questionable :)

Cheers,

Ed.

-- 
Coot verendus est

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