Dear all,
I'm rebuilding structure refined using phenix -1.7-650 using coot
0.6.2-pre-1-250.
When I use the rotamers command to select new rotamers (flagged as
bad by molprobity) some of the riding H atoms get left behind, which
means the file is no good for further crystallographic refinement.
Likewise, real space refinement produces the infamous flying hydrogens problem.
Any ideas on fixing this? Our current work around is to remove H and
then run reduce again prior to refinement in phenix.
Mark
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