Paul - what to do??? Eleanor
On Mon, 25 Jul 2011 11:40:59 +0200, Daniel Mattle <[email protected]> wrote: > Hey Eleanor, > > Thanks for the suggestion. > > Unfortunately, changing it to L-peptide does not help either. > > Now, if I import the cif file, i get a message that it is not found in the > library. > > I guess, I go for the manual way here instead. > > Best, > > Daniel > > On 25.07.2011, at 10:51, ccp4 wrote: > >> Your cif file does label it as a peptide? Look at the top of the cif >> file - By default most unusual things get flagged as non-peptides.. >> >> Eleanor >> >> >> On Mon, 25 Jul 2011 10:29:52 +0200, Daniel Mattle <[email protected]> >> wrote: >>> Dear all, >>> >>> I imported a cif file for an unusual amino acid and used then extensions >>> -> modelling -> replace residue to introduce this amino acids instead of >> an >>> asp. >>> >>> Unfortunately, the residue seems to be treated as a new chain and >>> disconnects it from the original molecule. >>> >>> Has anybody experiences to get around with that, so that I really do a >>> mutation of the asp residue instead of introducing a ligand? >>> >>> Thanks a lot, >>> >>> Daniel > > ________________________________ > Daniel Mattle, MSc ETH > PhD student > Centre for Structural Biology > Department of Molecular Biology > University of Aarhus > Gustav Wieds Vej 10c > DK - 8000 Århus C, Denmark > > Phone: +45 8942 5261 > Mail: [email protected]
