If you type in your terminal which coot you should get the path to coot 0.62 . Then check your sourced phenix.sh file if that directory is in your path.. Are you running phenix from the GUI ? Jürgen
...................... Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/ On Jul 30, 2011, at 6:46, Seema Nath <[email protected]> wrote: > Recently I've installed CCP4_6.2 (full package) and from then on COOT gives > error message about mmcif dictionary,log-in as su has solved this problem,but > running COOT from PHENIX_1.7.1_143 gives the same error,so I've uninstalled > CCP4_6.2 and remaining versions of it along with COOT and reinstall > CCP4_6.2.Now writing "COOT" in commandline gives : "bash: > /usr/local/bin/softwares/CCP4/Coot-0.6.0/bin/coot: No such file or > directory", if I manually "run in terminal" COOT then it opens the > COOT_0.6.2. But COOT cannot be operated alongwith PHENIX_1.7.1-143 or from > linux shell. Please help to fix the problem. > Thanking you. > > Seema Nath
