An automatic conversion may be too aggressive (maybe the user is refining in CNS which uses GUA,ADE,CYT,and URI), offer the user an option to change to the newer standard with a warning that if they don't, then the real space refine tools will not work.
F On Aug 18, 2011, at 6:41 AM, Huw Jenkins wrote: > Hi > > Having spent a while on the CCP4bb trying to fix what I thought was a Coot > library problem but turned out to be an issue with the input pdb file, and as > was suggested by the original poster on the bb, it would be useful if Coot > could correct the syntax of nucleic acid upon reading pdb files so that it > matches the dictionary and real-space refinement works. > > Given that Coot used by default to change nucleic acid to the old (Ur etc) > format and standard-residues.pdb is in the old format some of the code to do > this must already be there? > > Thanks, > > > Huw > -- > Dr Huw Jenkins > Astbury Centre for Structural Molecular Biology > University of Leeds
