A friend updated software on his Fedora 14 workstation within the last
couple days, and now Coot and pyMol both fail to work. Coot complains
that it can find neither the double-buffered visual nor a
single-buffered visual. Has anyone else encountered this (yet)? Which
packages are the most likely suspects?
Full startup output below the signature.
Cheers,
--
=======================================================================
All Things Serve the Beam
=======================================================================
David J. Schuller
modern man in a post-modern world
MacCHESS, Cornell University
[email protected]
/usr/bin/coot-real
Acquiring application resources from /usr/share/coot/cootrc
INFO:: splash_screen_pixmap_dir /usr/share/coot/pixmaps
INFO:: Colours file: /usr/share/coot/colours.def loaded
There are 125 data in
/usr/share/refmac-dictionary-5.21/data/monomers/list/mon_lib_list.cif
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
problem reading link angle mmCIFLoop
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/a/ALA.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/a/ASP.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/a/ASN.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/c/CYS.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/g/GLN.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/g/GLY.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/g/GLU.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/p/PHE.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/h/HIS.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/i/ILE.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/l/LYS.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/l/LEU.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/m/MET.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/m/MSE.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/p/PRO.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/a/ARG.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/s/SER.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/t/THR.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/v/VAL.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/t/TRP.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/t/TYR.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/p/PO4.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/s/SO4.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/g/GOL.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/e/ETH.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/c/CIT.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/g/GD.cif
There are 2 data in /usr/share/refmac-dictionary-5.21/data/monomers/h/HOH.cif
There are 1 data in
/usr/share/refmac-dictionary-5.21/data/monomers/ener_lib.cif
sbase monomer dir: .
sbase files not found in .
Reading coordinate file: /usr/share/coot/standard-residues.pdb
PDB file /usr/share/coot/standard-residues.pdb has been read.
Spacegroup: P 1
Cell: 40.631 109.18 93.243 90 90 90
*** Cannot find the double-buffered visual.
*** Trying single-buffered visual.
*** No appropriate OpenGL-capable visual found.
ERROR: no code for module (gtk gdk)
