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Tom Huxford pointed me to the ConSurf Server http://consurf.tau.ac.il which can replace the B-factor column in a PDB-file with the sequence confidentiality scored by a multiple sequence alignment. While not exactly what I wanted this service turned out to be utterly useful, especially in combination with prosmart by Rob Nicholls to generate external restraints for refmac5. Cheers, Tim - -------- Original Message -------- Subject: colour by sequence similarity Date: Wed, 28 Sep 2011 11:05:37 +0200 From: Tim Gruene <[email protected]> Reply-To: Tim Gruene <[email protected]> To: [email protected] Hi, is there a way in coot to colour a molecule according to the match of sequence similarity after an alignment/ superposition with another structure? I would find this really useful. Cheers, Tim -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFOhIKBUxlJ7aRr7hoRAgx2AKDdKLmHx1et4LJq01CyTukEmX8nJACgi3kD Hed/U4GxD19QIvrNm5oAv7M= =oe8L -----END PGP SIGNATURE-----
