Dear All, I am using baton to build a peptide. I use the Validate-unmodelled blobs 2Fo-Fc map got the green blob (the green blob is about 7 residues long). Then I use the Calculate-other modelling tools-Calpha Baton mode to get the yellow skeleton. I find the yellow scheleton is much longer than the green blobs at both ends of the green blob (At each end of the green blob the yellow skeleton is about 1-2 residues longer). In this situation I only build the pepttide for the length of the green blob or I build the peptide for the length of yellow skeleton?
In some situation I find the green blob was divided into 2 parts, one part is about 5-6 residues, one part is about 2 residues, between the 2 parts there is space of about 1-2 residues without green blob. In this situation how can I process the peptide baton build? I am looking forward to getting your reply. Cheers, Dialing
