Hi Dialing,
H geometry should be ideal after phenix.refine. If it is not the case
then please send me the PDB and I will have a look.
Pavel
On 12/6/11 3:49 AM, Dialing Pretty wrote:
Dear All,
I did a Phenix refine, and before the refine all the H were added.
MolProbity analysis demonstrated that almost everything are acceptable
after the refinement.
However when I did the geometry analysis by the COOT validation, I
find all the residues having a significant deviation bond involving H.
with z score higher than 7.
I am looking forward to getting an explanation from you on
it,including how to avoid it.
Cheers,
Dialing
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