On 10/05/12 03:12, Arto Pulk wrote:
Hi,
I'm trying to use latest coot-0.7 (4149) and do "Real-Space" refinement,
but after refinement the RNA (ribosomal RNA) sugar-phosphate backbone is
broke, all the individual RNA residues remain as monomers. With 0.62
version of coot there was no problem to get RNA residues back to
polynucleotide form, and you were able to anneal the broken residues by
"Regularize Zone". Is there problem with monomer library, as I got
restraints for RNA residues from "Get monomer" for Ar, Gr, Cr, and Ur or
other reason?
0.7 (and 0.7-pre) should work with canonical base names - i.e. G,A,U,C.
The capitalized names were created to match with refmac library names -
that is no longer needed. Or should not be. I don't recall now what
happens if you use the old names - possibly Bad Things :-/
Paul.
