Thank you Tony, Yes, I just send it into /tmp/root, I install under root account I am sure all can be fixed. I will wait for fink version if it will be one… :-\
FF Dr Felix Frolow Professor of Structural Biology and Biotechnology, Department of Molecular Microbiology and Biotechnology Tel Aviv University 69978, Israel Acta Crystallographica F, co-editor e-mail: [email protected] Tel: ++972-3640-8723 Fax: ++972-3640-9407 Cellular: 0547 459 608 On Jul 17, 2012, at 16:18 , Antony Oliver wrote: > Felix, did you define a suitable temp directory during the "configure" stage > of the installation? > I had to change this to get the installation to work ( just ~/Documents/ in > my case) – which it did on OSX Lion and Snow Leopard based machines. > > Tony. > > (Also I had to run it directly from the mounted volume, rather than copy it > to /Applications). > > > --- > Dr Antony W Oliver > > Senior Research Fellow > CR-UK DNA Repair Enzymes Group > Genome Damage and Stability Centre > Science Park Road > University of Sussex > Falmer, Brighton, BN1 9RQ > > email: [email protected] > tel (office): +44 (0)1273 678349 > tel (lab): +44 (0)1273 677512 > > > From: Felix Frolow <[email protected]> > Reply-To: Felix Frolow <[email protected]> > Date: Tue, 17 Jul 2012 15:55:55 +0300 > To: <[email protected]> > Subject: Re: CCP4 6.3.0 released > > I made an attempt to install ccp46.3.0 on MacOSX using Setup.app > No unexpectedly I have got: > > Ready to install > Selected package: Mac OSX > > =========================================================== > Remove /Applications/ccp4-6.3.0 > Remove /Applications/arp_warp_7.3 > ----------------------------------------------------------- > Decompressing CCP4 Program Suite v6.3.0, please wait ... > Installing CCP4 Program Suite v6.3.0 > Traceback (most recent call last): > File "/private/tmp/root/unpack.py", line 80, in <module> > mpkg = [i for i in os.listdir(dmgdir) if (".mpkg" in i) or (".pkg" in i)] > OSError > : [Errno 2] No such file or directory: '1' > > :-\ > > The other way, just using installers does not find proper tmp directory or > sort…… > Back to 6.2.0 > FF > > > Dr Felix Frolow > Professor of Structural Biology and Biotechnology, Department of Molecular > Microbiology and Biotechnology > Tel Aviv University 69978, Israel > > Acta Crystallographica F, co-editor > > e-mail: [email protected] > Tel: ++972-3640-8723 > Fax: ++972-3640-9407 > Cellular: 0547 459 608 > > On Jul 16, 2012, at 20:51 , [email protected] wrote: > >> Dear All, >> >> >> We're very pleased to announce the release of the latest version of the CCP4 >> Software Suite. Version 6.3.0 (Settle) is now available from the CCP4 >> download website: >> >> http://www.ccp4.ac.uk/download.php >> >> The release is available for Linux, Mac OSX and Windows platforms, and >> delivers a number of new programs, updates and features: >> >> >> 1. New Components and Updates: >> >> New: >> Aimless (Scaling and Merging, replacement for Scala) >> Prosmart (Generation of external restraints for Refmac) >> Nautilus (Automatic building of RNA/DNA) >> Ample (Automatic Ab initio modelling for Molecular Replacement) >> Dimple (Automatic difference map calculation) >> Zanuda (Space group checker/validator) >> CMapCut (Preparation of electron-density search model for MR) >> Comit (Composite omit maps) >> Gesamt (Structure aligner not using secondary structure assignments) >> ViewHKL (Graphical viewer for reflection data) >> >> Updated: >> Mosflm v7.0.9 (Data processing/reduction) iMosflm v1.0.7 (Mosflm GUI) >> Pointless v1.6 (Laue group determination) >> Refmac v5.7 (Macromolecular refinement) >> Phaser v2.5.1 (Molecular Replacement and Experimental Phasing) >> MrBump (Automatic Molecular Replacement, now includes >> phaser.sculptor models) >> Xia2 (Automated data reduction) >> CCP4mg v2.6.2 (CCP4 Molecular Graphics, much improved on features and >> stability) >> >> CCP4 Graphical User Interface: >> - new automation module >> - provides interfaces for new and updated modules >> - ViewHKL option for viewing reflection (mtz) files >> >> More information on updates is available from: >> >> http://www.ccp4.ac.uk/html/CHANGESinV6_3.html >> >> >> >> 2. ARP/wARP co-distribution >> >> Release 6.3.0 marks a milestone in collaboration between CCP4 and ARP/wARP >> teams by releasing ARP/wARP Model Building software v7.3 jointly with CCP4 >> Software Suite. In order to get ARP/wARP Software, academic users need only >> to select the appropriate package from download pages or with our new >> Package Manager, and type in their name and e-mail address where required. >> Commerical users will be required also to provide their reference number, >> obtainable separately from EMBL-EM. >> >> ARP/wARP 7.3 includes the following major updates and changes (on behalf of >> Victor Lamzin): >> >> - The protocols for the use of NCS in protein chain tracing have >> been improved and expanded to a wider range of resolutions. >> - Common ligands can now be automatically identified and fit into >> a specified electron density. >> - The algorithm for modelling partial ligands (cocktail screening) >> has been replaced with a new one that applies a number of >> sophisticated numerical features >> - The ARP/wARP graphics front-end, ArpNavigator, automatically >> assigns secondary structure and has an improved visual presentation >> of a static model or real time protein or ligand building. >> - Supported computer platforms are Mac powerpc, Mac Intel and Linux >> (including 32 and 64-bit versions). >> - The ARP/wARP installer has been considerably updated on all platforms. >> - Joint software release and authentication with the CCP4 is now >> possible. >> - CCP4 6.3.0 and Refmac 5.7.0029 are the recommended versions to >> use with ARP/wARP 7.3. >> >> >> 3. 64-bit precompiled packages >> >> Starting with version 6.3.0, CCP4 distributes both 32-bit and 64-bit >> precompiled binaries for Linux. Note that 64-bit codes will not run on >> 32-bit architectures, and 32-bit codes will run on 64-bit setups only if >> 32-bit libraries are installed (not a default for most Linuxes). >> >> THEREFORE: PLEASE MAKE SURE THAT YOU HAVE SET THE 32-bit/64-bit SWITCH ON >> TOP OF THE DOWNLOAD PAGES CORRECTLY BEFORE ALL! >> >> >> 4. "Friendly" Coot and CCP4mg distributions >> >> Coot is known to be less portable than the rest of CCP4 Program Suite. >> CCP4mg is more portable and requires special builds only for older Linuxes. >> Our new Package Manager will try to automatically choose Coot and CCP4mg >> bundles that are most appropriate for your system. In addition, our new >> download pages will offer you a range of precompiled Coot and CCP4mg >> packages, from where you may choose ones that work for you. >> >> >> 5. New distribution mechanism >> >> We hope that you will find our new Download Pages more intuitive and >> convenient than before. We have worked hard to improve our Windows >> installer, to make it working faster and smoother. On Linux and Mac >> platforms, we recommend using Package Manager, a small graphical application >> that allows you to select the desired components, and automatically download >> and install them on your system. Note that Package Manager features >> resumable downloads, which may be useful for users with slow or less >> reliable Internet connection. >> >> >> >> We would like to thank all of the developers who have contributed into CCP4 >> 6.3.0, and all of those who have helped in testing it. The following >> publication should be used to cite the use of CCP4: >> >> >> M. D. Winn, C. C. Ballard, K. D. Cowtan, E. J. Dodson, P. Emsley, P. R. >> Evans, R. M. Keegan, E. B. Krissinel, A. G. W. Leslie, A. McCoy, S. J. >> McNicholas, G. N. Murshudov, N. S. Pannu, E. A. Potterton, H. R. Powell, R. >> J. Read, A. Vagin and K. S. Wilson (2011) Overview of the CCP4 suite and >> current developments, Acta Cryst D67 235-242. >> >> CCP4 is supported by the BBSRC UK through grant BB/F0202281, as well as by >> the number of industrial users. >> >> >> CCP4 6.3.0 is out now, and we hope that you will find it a helpful advance >> in crystallographic computing. >> >> >> Best wishes, >> >> CCP4 Core Team >> >> >> -- >> Scanned by iCritical. >
