On 09/10/12 23:47, jpd wrote:
hi,
i am not sure if this is a coot or phenix problem, but i'll start here.
we work on large complexes and after refining in phenix
we try to open it in coot and get avalanched with
INFO:: found bad VAL chiral atom: B 14 CB
we get so many of the warnings that it can crash the session.
this is only in coot 0.7
the same file in coot 0.6.2 opens ok
Crash? Oh dear. I am surprised that phenix and coot don't agree about
the nomenclature of valines.
To your ~/.coot you can add:
(set-nomenclature-errors-on-read "ignore")
or to your .coot.py
set_nomenclature_errors_on_read('ignore')
(there might be consequences of course.)
Paul
