Apologies for another message, but a modification of the autobuild command to run
export AUTOBUILD_INSTALLED=/data/software/coot export AUTOBUILD_BUILD=/tmp/autobuild export LOGS=$AUTOBUILD_BUILD/logs export build_coot_prerelease=0 bash build-it-gtk2-simple python > build.log gets me a little further. Coot is now failing to compile with: /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/data/software/coot-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/data/software/coot-gtk2-python/share/coot/locale"' -DDATADIR='"/data/software/coot-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.1-python-gtk2"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/data/software/coot-gtk2-python/include -P -pthread -DUSE_PYTHON -I/data/software/coot-gtk2-python/include/python2.7 -I/data/software/coot-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o coot-real main.o svn-revision.o c-inner-main.o c-interface-analysis.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-scm.o c-interface-sfs.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o drag-and-drop.o geometry-graphs.o get-residue.o flev.o generic-objects.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp ../lbg/libcoot-lidia.la ../ligand/libcoot-ligand.la ../lidia-core/libcoot-lidia-core.la ../goograph/libcoot-goograph.la ../libgtkgraph/libcoot-gtkgraph.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-surface/libcoot-surface.la ../surface/libccp4mg-surface.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la /data/software/coot-gtk2-python/lib/libguilegtk-2.0.la -P -pthread -L/data/software/coot-gtk2-python/lib -lguile -lltdl -L/data/software/coot-gtk2-python/lib -lgmp -lcrypt -lm -lltdl -L/data/software/coot-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/data/software/coot-gtk2-python/lib -L/data/software/coot-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/data/software/coot-gtk2-python/lib -lssm -L/data/software/coot-gtk2-python/lib -L/data/software/coot-gtk2-python -lmmdb -lm -L/data/software/coot-gtk2-python/lib/python2.7/config -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker -export-dynamic -lutil -Wl,--export-dynamic -pthread -L/data/software/coot-gtk2-python/lib -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgmodule-2.0 -lrt -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 -L/data/software/coot-gtk2-python/lib -lglut -L/usr/X11R6/lib -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 -L/data/software/coot-gtk2-python/lib -lgsl -lgslcblas -lm -L/data/software/coot-gtk2-python/lib -lcurl /data/software/coot-gtk2-python/lib/libgoocanvas.la -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/data/software/coot-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/data/software/coot-gtk2-python/share/coot/locale\" -DDATADIR=\"/data/software/coot-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-12.04.1-python-gtk2\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/data/software/coot-gtk2-python/include -P -pthread -DUSE_PYTHON -I/data/software/coot-gtk2-python/include/python2.7 -I/data/software/coot-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o coot-real main.o svn-revision.o c-inner-main.o c-interface-analysis.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-scm.o c-interface-sfs.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o drag-and-drop.o geometry-graphs.o get-residue.o flev.o generic-objects.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp -P -pthread -Wl,-export-dynamic -Wl,--export-dynamic -pthread ../lbg/.libs/libcoot-lidia.a -L/data/software/coot-gtk2-python/lib -L/data/software/coot-gtk2-python ../ligand/.libs/libcoot-ligand.a ../lidia-core/.libs/libcoot-lidia-core.a ../goograph/.libs/libcoot-goograph.a ../libgtkgraph/.libs/libcoot-gtkgraph.a ../density-contour/.libs/libcoot-isosurface.a ../build/.libs/libcoot-cabuild.a ../skeleton/.libs/libcoot-skeleton.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/angles/.libs/libcoot-AngleInfo.a ../angles/.libs/libcoot-AngleInfo.a ../db-main/.libs/libcoot-db-main.a ../high-res/.libs/libcoot-high-res.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/ligand/.libs/libcoot-ligand.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/ideal/.libs/libcoot-ideal.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/db-main/.libs/libcoot-db-main.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/ccp4mg-utils/.libs/libccp4mg-utils.a ../ideal/.libs/libcoot-ideal.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/coot-utils/.libs/libcoot-map-heavy.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/coords/.libs/libcoot-coords.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/coot-utils/.libs/libcoot-coord-extras.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/coot-utils/.libs/libcoot-shelx.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/lidia-core/.libs/libcoot-lidia-core.a ../coot-surface/.libs/libcoot-surface.a -L/usr/X11R6/lib /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/surface/.libs/libccp4mg-surface.a ../surface/.libs/libccp4mg-surface.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-heavy.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../analysis/.libs/libcoot-analysis.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/coot-utils/.libs/libcoot-coord-utils.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/geometry/.libs/libcoot-geometry.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/mini-mol/.libs/libcoot-mini-mol.a /tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/utils/.libs/libcoot-utils.a ../protein_db/.libs/libcoot-protein-db.a ../cootilus/.libs/libcootilus.a ../cootaneer/.libs/libcootaneer.a ../compat/.libs/libcoot-compat.a /data/software/coot-gtk2-python/lib/libguilegtk-2.0.so -lgthread-2.0 /data/software/coot-gtk2-python/lib/libguile.so /data/software/coot-gtk2-python/lib/libgmp.so -lcrypt /data/software/coot-gtk2-python/lib/libltdl.so /data/software/coot-gtk2-python/lib/libclipper-ccp4.so /data/software/coot-gtk2-python/lib/libclipper-cif.so /data/software/coot-gtk2-python/lib/libclipper-phs.so /data/software/coot-gtk2-python/lib/libclipper-contrib.so /data/software/coot-gtk2-python/lib/libclipper-minimol.so /data/software/coot-gtk2-python/lib/libclipper-cns.so /data/software/coot-gtk2-python/lib/libclipper-mmdb.so /data/software/coot-gtk2-python/lib/libclipper-core.so /data/software/coot-gtk2-python/lib/libccp4c.so /data/software/coot-gtk2-python/lib/librfftw.so /data/software/coot-gtk2-python/lib/libfftw.so /data/software/coot-gtk2-python/lib/libssm.so /data/software/coot-gtk2-python/lib/libmmdb.so -L/data/software/coot-gtk2-python/lib/python2.7/config -lpthread -ldl -lpython2.7 -lutil /data/software/coot-gtk2-python/lib/libgtkglext-x11-1.0.so /data/software/coot-gtk2-python/lib/libgdkglext-x11-1.0.so -lXmu -lXt -lSM -lICE -lpangox-1.0 -lgmodule-2.0 /data/software/coot-gtk2-python/lib/libglut.so -lGL -lGLU -lXext -lX11 -lXxf86vm -lgnomecanvas-2 /usr/lib/x86_64-linux-gnu/libart_lgpl_2.so /data/software/coot-gtk2-python/lib/libgsl.so /data/software/coot-gtk2-python/lib/libgslcblas.so -lm /data/software/coot-gtk2-python/lib/libcurl.so /data/software/coot-gtk2-python/lib/libidn.so -lrt -lssl -lcrypto -lz /data/software/coot-gtk2-python/lib/libgoocanvas.so -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 /usr/lib/x86_64-linux-gnu/libcairo.so -lpango-1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig -lgobject-2.0 -lglib-2.0 -pthread -Wl,-rpath -Wl,/data/software/coot-gtk2-python/lib -Wl,-rpath -Wl,/data/software/coot-gtk2-python/lib /usr/bin/ld: /data/software/coot-gtk2-python/lib/libpython2.7.a(dynload_shlib.o): undefined reference to symbol 'dlsym@@GLIBC_2.2.5' /usr/bin/ld: note: 'dlsym@@GLIBC_2.2.5' is defined in DSO /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/libdl.so so try adding it to the linker command line /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/libdl.so: could not read symbols: Invalid operation collect2: ld returned 1 exit status make[1]: *** [coot-real] Error 1 make[1]: Leaving directory `/tmp/autobuild/cmlx21_2012-11-29__T19_45_09/coot-0.7/src' make: *** [all-recursive] Error 1 make failed. Pretty stumped here, will give it a break for tonight, Amadeus -----Original Message----- From: Mailing list for users of COOT Crystallographic Software [mailto:[email protected]] On Behalf Of Amadeus Stevenson Sent: 29 November 2012 18:42 To: [email protected] Subject: Re: Autobuilding coot 0.7 fails on coot (Ubuntu 12.04 x64) Thanks Jeff, Pete. Digging around in the system for the python headers gives me: /usr/include/python2.7/pythonrun.h /data/software/coot-gtk2-python/include/python2.7/pythonrun.h I've done some more digging, this time from the coot config.log: configure:19879: result: yes configure:19907: checking for Python configure:20020: checking Python.h usability configure:20037: gcc -c -g -O2 -DUSE_PYTHON conftest.c >&5 conftest.c:55:20: fatal error: Python.h: No such file or directory compilation terminated. configure:20044: $? = 1 and then some more from 16-coot.txt checking for Python... ImportError: No module named site python not found. error ImportError: No module named site ImportError: No module named site ImportError: No module named site checking Python.h usability... no checking Python.h presence... no checking for Python.h... no So it looks like the Python libraries are not being passed. I'm not sure which script to modify to include them? I will keep digging. Amadeus -----Original Message----- From: Jeffrey Van Voorst [mailto:[email protected]] Sent: 29 November 2012 17:56 To: Amadeus Stevenson Subject: Re: Autobuilding coot 0.7 fails on coot (Ubuntu 12.04 x64) I am not familiar with building coot, but you will need to get the build system to include the headers for the Python that Autobuild compiled. Supposing that directory is ../include/python2.7, you will need to add -I../include/python2.7 to the build command. For example on debian, the system header file that contains the prototype for Py_Initialize is /usr/include/python2.6/pythonrun.h. If you need to find this header file, you could try 'find /path/to/coot/build/dir -name "*.h" | xargs grep Py_Initialize' (without the quotes -- ' ' ). I am assuming that the autobuild process would have taken care of providing the correct C flags and C library to build coot (if it does build its own Python). In other words, maybe this particular way of building coot is unsupported or has fallen out of use. On 11/29/12 11:41 AM, Amadeus Stevenson wrote: > Hi Jeff, > > Thanks for the quick reply. > > I have installed the Ubuntu python-dev package: > > $ dpkg --listfiles python-dev > /. > /usr > /usr/bin > /usr/share > /usr/share/man > /usr/share/man/man1 > /usr/share/doc > /usr/lib > /usr/lib/pkgconfig > /usr/bin/python-config > /usr/bin/python2-config > /usr/share/man/man1/python-config.1.gz > /usr/share/man/man1/python2-config.1.gz > /usr/share/doc/python-dev > /usr/lib/pkgconfig/python.pc > > Autobuild has compiled its own version of python > > $AUTOBUILD_BUILD /include/python2.7/ > > Amadeus > > > -----Original Message----- > From: Jeffrey Van Voorst [mailto:[email protected]] > Sent: 29 November 2012 17:36 > To: Amadeus Stevenson > Subject: Re: Autobuilding coot 0.7 fails on coot (Ubuntu 12.04 x64) > > Hi Amadeus, > > The -lpython flag is for linking to the python library. In this command you > need to specify the location of the directory that contains the python header > file. > > Is the Python development package included in your Ubuntu installation? > If so, do you know the path to where Ubuntu installed the Python header files? > > --Jeff > > On 11/29/12 11:09 AM, Amadeus Stevenson wrote: >> Hello, >> >> I'm trying to autobuild coot 0.7 on Ubuntu 12.04 x64. >> >> Running : >> >> wget http://coot.googlecode.com/svn/trunk/build-it-gtk2-simple >> >> export AUTOBUILD_INSTALLED=/data/software/coot >> export AUTOBUILD_BUILD=/tmp/autobuild export >> LOGS=$AUTOBUILD_BUILD/logs export NIGHTLY_DEST_DIR=$AUTOBUILD_BUILD >> export STABLE_DEST_DIR=$AUTOBUILD_BUILD export >> build_coot_prerelease=0 export >> do_nightlies=0 export check_dependencies_in_install_only=0 >> >> ./build-it-gtk2-simple python >> >> makes it as far as 16-coot.txt: >> >> g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" >> -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" >> -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 >> -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 >> -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 >> -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../mini-mol >> -I../geometry -I../coot-utils -I../utils >> -I/data/software/coot-gtk2-python/include -DHAVE_GOOCANVAS >> -I/data/software/coot-gtk2-python/include/goocanvas-1.0 -pthread >> -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include >> -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 >> -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ >> -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include >> -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 >> -I/data/software/coot-gtk2-python/include >> -I/data/software/coot-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH >> -DHAVE_MMDB_WITH_CISPEP >> -DPKGDATADIR='"/data/software/coot-gtk2-python/share/coot"' -g -O -MT >> lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o >> lbg-callbacks-outer.o lbg-callbacks-outer.cc >> lidia-main.cc: In function 'int main(int, char**)': >> lidia-main.cc:61:18: error: 'Py_Initialize' was not declared in this >> scope >> lidia-main.cc:62:28: error: 'PySys_SetArgv' was not declared in this >> scope mv -f .deps/lbg-drag-and-drop.Tpo .deps/lbg-drag-and-drop.Plo >> make[1]: *** [lidia-main.o] Error 1 >> make[1]: *** Waiting for unfinished jobs.... >> mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po mv >> -f .deps/lbg.Tpo .deps/lbg.Plo >> make[1]: Leaving directory >> `/tmp/autobuild/cmlx21_2012-11-29__T15_04_26/coot-0.7/lbg' >> make: *** [all-recursive] Error 1 >> make failed. >> >> Googling the compiler error leads to suggestions that -lpython needs to be >> included, but I can't figure out where to insert it into the Makefile, or if >> it indeed will help. >> >> Also, I noticed that despite python being installed system-wide, autobuild >> compiles its own version. Not a big deal, but was wondering if there's a way >> to use the system-wide version to reduce duplication. >> >> Any help much appreciated, >> >> Amadeus >
