This seems to be a 10.6 issue since same version on 10.8 centres fine. On 2013-02-19, at 4:09 PM, Dmitry Rodionov <[email protected]> wrote:
> Dear all, > > After upgrading to latest (Fink's 0.7.1-pre-4562) coot we are experiencing a > strange problem: > coot reproducibly crashes if one tries to centre on a non-protein non-water > atom. > > Coot's last words: > > (0) " S "/1/chainid="B"/1/DMS, occ: 0.79 with B-factor: 27.78 element: " S" > at (12.282,65.946,153.1) : 0.180006 > INFO:: recentre: clicked on imol: 0 > coot-real(60501,0x7fff71290cc0) malloc: *** error for object 0x7fff5fbfbd68: > pointer being freed was not allocated > *** set a breakpoint in malloc_error_break to debug > /sw/bin/coot: line 6: 60501 Abort trap /sw/bin/coot-real "$@" > > or > > (0) " P "/1/chainid=""/1/PO4, occ: 1 with B-factor: 30 element: " P" at > (0,0.021,0.036) : 0.153325 > INFO:: recentre: clicked on imol: 0 > coot-real(19455,0x7fff70f8dcc0) malloc: *** error for object 0x7fff5fbfbea8: > pointer being freed was not allocated > *** set a breakpoint in malloc_error_break to debug > /sw/bin/coot: line 6: 19455 Abort trap /sw/bin/coot-real "$@" > > every time it's something about "pointer being freed was not allocated". > > Purging and rebuilding Coot does not fix the problem. > > Has anybody seen this behaviour? > > Best regards, > Dmitry >
