My understanding was that Tim uses pythonic extensions - I guess that
this is one of those (rare, I think) functions where the python
preference is not accounted for. I'll take a look - it should be a
simple fix.
I intend to update to guile-gnome at some stage - it was the major
feature/update slated for 0.8.
Cheers,
Paul.
On 02/03/13 02:39, Tim Fenn wrote:
This is because coot uses guile-gui, which along with guile-gtk is
deprecated, no longer has a home and cannot be included/supported with
fedora releases. So extensions which depend on it (like add strand)
will fail, while those that don't (like add helix) run OK.
I'm hoping that eventually these extensions will be updated to use
guile-gnome (Paul?).
If these functions are important to you, you'll have to use one of
Paul's binaries or build it yourself.
HTH,
Tim
On Fri, Mar 1, 2013 at 2:27 PM, Yogesh Gupta <yogesh.gu...@mssm.edu
<mailto:yogesh.gu...@mssm.edu>> wrote:
Hello coot users,
Recently updated fedora (fedora core 17) and installed coot-0.7
using binary (coot-0.7-1.20120929svn4458.fc17.x86_64). Coot is
working normally except in one case when attempted adding a
strand, i encountered with following error:
((safe_scheme_command) Error in proc: key: unbound-variable
args: (#f Unbound variable: ~S (place-strand-here-gui) #f))
I ran the script (place-strand-here-gui) manually and that too
failed with these errors:
1) Error in python scripting panel:
coot >> place-strand-here-gui
BL WARNING:: Python error!
(Or you attempted to use an invalid guile command...)
Python error:
name 'place' is not defined
<type 'exceptions.NameError'>
coot >>
2) Error shown in coot terminal window:
Read OK: /usr/share/coot/reference-structures/1h97.pdb
INFO:: SSE status was OK
has 0 sheets
Strand addition failure: message: Not Done
Also, there was another error at the beginning in coot terminal:
load "coot-utils.scm"
(Error in proc: misc-error args: (#f ~A ~S (no code for module
(os process)) #f))
I updated guile package but that did not help. Any suggestions on
how to fix this?
I thank you in advance.
Yogesh
