One of Bill's standalone packages works fine for us on 10.6. If I remember
correctly, it is the stable one from here:
http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Stand-Alone_Coot
Poor trusty 10.6...
Regards,
Dmitry
On 2013-04-24, at 3:57 AM, Engin Özkan wrote:
> Hi everybody,
>
> After a long break, I tried to run coot on my 10.6.8 Mac, but could not even
> start coot. I am running the latest fink package (0.7.1-pre-4562), but I also
> tried the latest stand-alone binary (4613) from Bill Scott. I would
> appreciate anyone with hints to solve this problem.
>
> Coot dies around here:
> There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif
> There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif
> Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb
> PDB file /Library/Coot/share/coot/standard-residues.pdb has been read.
> Spacegroup: P 1
> Cell: 40.631 109.18 93.243 90 90 90
> initalize graphics molecules...done.
> (filter-fileselection-filenames-state)
> (get-active-map-drag-flag)
> /usr/local/bin/coot: line 7: 924 Segmentation fault
> /Library/Coot/bin/coot-real "$@"
>
>
> Below are the gdb backtraces. (gdb also warned about a million missing object
> files, but I think that has more to do with how the executables are produced,
> and gdb looks for things; I may be very wrong.)
>
> For the stand-alone coot,
> ... (a very long list of library object files missing)
> warning: Could not find object file
> "/Library/Coot/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-prop-list.o"
> - no debug information available for "cr-prop-list.c".
>
>
> warning: Could not find object file
> "/Library/Coot/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-parsing-location.o"
> - no debug information available for "cr-parsing-location.c".
>
>
> warning: Could not find object file
> "/Library/Coot/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-string.o"
> - no debug information available for "cr-string.c".
>
> ....... done
> #0 0x0000000000000000 in ?? ()
> (gdb) where
> #0 0x0000000000000000 in ?? ()
> #1 0x00000001034160e7 in PyEval_GetGlobals ()
> #2 0x0000000103436372 in PyImport_Import ()
> #3 0x00000001034365a8 in PyImport_ImportModule ()
> #4 0x00000001033760d8 in PyCapsule_Import ()
> #5 0x000000010040c96e in _wrap_segment_map ()
> #6 0x000000010046d69f in _wrap_make_variance_map ()
> #7 0x0000000100010eab in setup_screen_size_settings ()
> #8 0x000000010000f0a8 in __static_initialization_and_destruction_0 ()
>
>
> For the fink-installed coot,
> ... (a very long list of library object files missing)
> warning: Could not find object file
> "/sw/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-string.o"
> - no debug information available for "cr-string.c".
>
> ....... done
> #0 0x0000000000000000 in ?? ()
> (gdb) where
> #0 0x0000000000000000 in ?? ()
> #1 0x00000001033f90f7 in PyEval_GetGlobals ()
> #2 0x0000000103419382 in PyImport_Import ()
> #3 0x00000001034195b8 in PyImport_ImportModule ()
> #4 0x00000001033590e8 in PyCapsule_Import ()
> #5 0x000000010040b01e in SWIG_Python_GetModule ()
> #6 0x000000010046b01d in init_coot ()
> #7 0x0000000100011c5b in main ()
>
>
> Thanks,
> Engin
> --
> Engin Özkan
> Post-doctoral Scholar
> Laboratory of K. Christopher Garcia
> Howard Hughes Medical Institute
> Dept of Molecular and Cellular Physiology
> 279 Campus Drive, Beckman Center B173
> Stanford School of Medicine
> Stanford, CA 94305
> w ph: (650)-498-7111
> cell: (650)-862-8563
>
