Thanks for the help! Best, Arto
On Wed, Apr 24, 2013 at 3:48 AM, Bernhard Lohkamp <bernhard.lohk...@ki.se>wrote: > > For merging use: > > merge_molecule([list of things to merge], imol_to_be_merged_into) > > As for renaming chains: > > change_chain_id(imol, new_chain_id, chain_id_in, use_res_range_flag, > resno_from, resno_to) > > or > > change_chain_id_with_result(imol, new_chain_id, chain_id_in, > use_res_range_flag, resno_from, resno_to) > > > You have to be careful when chaining chain ids as Coot wont allow you to > insert doublicate residue numbers in the same chain. So you may have to > renumber residues first. > > Hope this helps, > > B > > > Hey, > > > > I have been trying to find the script command that would do the same > thing as gui "copy fragment", but no success. > > I have to copy hundreds of fragments and merge them to new molecule. > With gui it would take long time, then I was thinking to try to make a > script. I only found the copy_molecule or copy_chain, but I do not want to > copy whole chain, only a "fragment" (specific residues). Is there command > (python) to copy fragment? > > I could use: > > copy_residue_range > > then I would change the chain id and renumber. I see the renumbering > command, but no command for changing chain id? > > > > > > Best, > > Arto > > > > > -- > *************************************************** > > Dr. Bernhard Lohkamp > Assistant Professor > Div. Molecular Structural Biology > Dept. of Medical Biochemistry and Biophysics (MBB) > Karolinska Institutet > S-17177 Stockholm > Sweden > > phone: (+46) 08-52487651 > fax: (+46) 08-327626 > email: bernhard.lohk...@ki.se >
