Hi all,
I get the GUI error “something went wrong running cprodrg” when I try to view a
ligand in LIDIA - I’m guessing some incompatibility between coot and the
version of cprodrg distributed with CCP4 6.4.0? I am running the latest coot
nightly build (0.8-pre r4833) on Mac OS X 10.9, using CCP4 with all current
updates installed. The console output is reproduced below. Thanks in advance
for any help/advice!
Oliver.
DEBUG:: obj is "<B><FONT COLOR=\"#FF0000\"><!--SUMMARY_BEGIN-->"
DEBUG:: obj is "<html> <!-- CCP4 HTML LOGFILE -->"
DEBUG:: obj is "<hr>"
DEBUG:: obj is "<!--SUMMARY_END--></FONT></B>"
DEBUG:: obj is "<B><FONT COLOR=\"#FF0000\"><!--SUMMARY_BEGIN-->"
DEBUG:: obj is "<pre>"
DEBUG:: obj is " "
DEBUG:: obj is "
###############################################################"
DEBUG:: obj is "
###############################################################"
DEBUG:: obj is "
###############################################################"
DEBUG:: obj is " ### CCP4 6.4: PRODRG version 2.5-AA0717 :
##"
DEBUG:: obj is "
###############################################################"
DEBUG:: obj is " User: olibclarke Run date: 24/11/2013 Run time: 22:22:25 "
DEBUG:: obj is ""
DEBUG:: obj is ""
DEBUG:: obj is " Please reference: Collaborative Computational Project, Number
4. 1994."
DEBUG:: obj is " \"The CCP4 Suite: Programs for Protein Crystallography\". Acta
Cryst. D50, 760-763."
DEBUG:: obj is " as well as any specific reference in the program write-up."
DEBUG:: obj is ""
DEBUG:: obj is "<!--SUMMARY_END--></FONT></B>"
DEBUG:: obj is #<eof>
(info-dialog "Something went wrong running cprodrg
")
Symmetry available for this molecule
(graphics-molecule-bond-type 8)
(update-go-to-atom-window-on-new-mol)
(write-pdb-file 8 "coot-ccp4/prodrg-tmp-68067-xyzin.pdb")
:<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
forrtl: severe (180): SIGBUS, bus error occurred
Image PC Routine Line Source
cprodrg 00000001000013FC Unknown Unknown Unknown
cprodrg 00000001000011AC Unknown Unknown Unknown
cprodrg 0000000100001164 Unknown Unknown Unknown
:<html> <!-- CCP4 HTML LOGFILE -->
:<hr>
:<!--SUMMARY_END--></FONT></B>
:<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
:<pre>
:
: ###############################################################
: ###############################################################
: ###############################################################
: ### CCP4 6.4: PRODRG version 2.5-AA0717 : ##
: ###############################################################
: User: olibclarke Run date: 24/11/2013 Run time: 22:22:25
:
:
: Please reference: Collaborative Computational Project, Number 4. 1994.
: "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50,
760-763.
: as well as any specific reference in the program write-up.
:
:<!--SUMMARY_END--></FONT></B>
(close-molecule 8)
