Dear Cootiers, Wincoot version 0.9.6
When I read the PDB format file of 7PGU downloaded from PDBe, everything is fine. If I convert both the archive and updated cif from PDBe to PDB format, everything is fine. Fine means I see chains F and N in the Go-to menu, see the Zn links , and can display Ca/backbone normal as traces. If I open the archive or updated cfif file, I see an empty chain A and B in the go-to menu, the Zn links are gone, and if I display Ca/backbone, the chain F is interpreted/displayed as single hetero atoms (also the AA images are dislayed like ligands). I find nothing offensive in the cif, but if I remove from the cif the content of the (I believe correct) loop_ _struct_asym.id... # then the empty A,B chains are gone, ca/backbone is displayed correctly as backbone traces, but the Zn links are still missing. Can someone please verify if this finding is correct and happens on other versions? My suspicion is that some part of the chain assignment is interpreted incorrectly and causes the mess. Best regards, BR ----------------------------------------------------------------- Bernhard Rupp (Hofkristallrat a. D) 001 (925) 209-7429 +43 (676) 571-0536 b...@ruppweb.org hofkristall...@gmail.com http://www.ruppweb.org/ ----------------------------------------------------------------- The hard part about playing chicken is to know when to flinch ----------------------------------------------------------------- ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
