Hi all, Has anyone successfully built coot-1.0.02 on centos7+anaconda3 python environment? My OS environment is below.
$ uname -a Linux lab 3.10.0-1127.el7.x86_64 #1 SMP Tue Mar 31 23:36:51 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux $ python --version Python 3.7.6 $ make --version GNU Make 3.82 Built for x86_64-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html > This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. $ gcc --version gcc (GCC) 8.3.1 20190311 (Red Hat 8.3.1-3) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. I tried to build it with the script ( https://raw.githubusercontent.com/pemsley/coot/gtk3/build-it-3-3). But it failed with unknown reasons. The build.log says only "coot build failed, exiting" in the last line without any other error messags. See below for last 20 lines. numpy is found, skip building rdkit 2020_09_3 building QED libunistring skip_this true not building libunistring not building gc not building gmp BUILDING guile: BUILDING g-wrap: BUILDING guile-cairo guile-lib needs to be installed some test here guile-config found guile-gnome-platform skip_this false 222222222222222 Now Coot..... Thu Apr 7 14:41:36 PDT 2022 /data2/sw/coot-1.0.01 BUILDING coot coot build failed, exiting. Even I tried to build with ./configure and make. It came with an error message as below. /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.0.01\" -DPACKAGE_STRING=\"coot\ 1.0.01\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.0.01\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.7\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include -fopenmp -DPKGDATADIR='"/usr/local/share/coot"' -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng15 -g -O2 -Wall -Wno-unused -std=c++11 -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c -o residue_by_phi_psi.lo residue_by_phi_psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.0.01\" "-DPACKAGE_STRING=\"coot 1.0.01\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.0.01\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.7\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include -fopenmp -DPKGDATADIR=\"/usr/local/share/coot\" -DUSE_SQLITE3 -DUSE_LIBPNG=1 -I/usr/include/libpng15 -g -O2 -Wall -Wno-unused -std=c++11 -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o residue_by_phi_psi.cc: In member function ‘void coot::residue_by_phi_psi::init_phi_psi_plot()’: residue_by_phi_psi.cc:869:37: error: ‘All2’ is not a member of ‘clipper::Ramachandran’ rama.init(clipper::Ramachandran::All2); ^~~~ residue_by_phi_psi.cc:871:41: error: ‘Pro2’ is not a member of ‘clipper::Ramachandran’ rama_pro.init(clipper::Ramachandran::Pro2); ^~~~ make[1]: *** [residue_by_phi_psi.lo] Error 1 make[1]: Leaving directory `/data2/sw/coot-1.0.01/ligand' make: *** [all-recursive] Error 1 Thanks! Jianhao ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
