That clipper is old clipper. You need the clipper from the build script.
Paul.
On 27/06/2022 03:10, hari jayaram wrote:
Dear Paul and the coot community
It's been 6 years since I posted on any coot forum . I saw the
exciting news around coot-1 and am itching to dive back in.
I am trying to compile coot-1 on Ubuntu 20.04
After installing a series of dependencies, which I can gladly report
back to you on...the build started without any issues. It however
stopped with this error --see below
I got all the libraries including the clipper libraries from Ubuntu (
sudo apt-get install libclipper-dev)
I wonder how to proceed past this.
Thanks a tonne for your help
Hari
"""
/bin/bash ../libtool --tag=CXX --mode=compile g++
-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\"
-DPACKAGE_VERSION=\"1\" -DPACKAGE_STRING=\"coot\ 1\"
-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\"
-DVERSION=\"1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1
-DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1
-DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.8\" -DHAVE_BOOST=/\*\*/
-DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DHAVE_GSL -I/usr/include
-DMMDB_HAS_LINK_DISTANCE -fopenmp
-DPKGDATADIR='"/usr/local/share/coot"' -DUSE_LIBPNG=1
-I/usr/include/libpng16 -g -O2 -Wall -Wno-unused -std=c++11 -MT
residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c -o
residue_by_phi_psi.lo residue_by_phi_psi.cc
libtool: compile: g++ -DPACKAGE_NAME=\"coot\"
-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1\"
"-DPACKAGE_STRING=\"coot 1\"" -DPACKAGE_BUGREPORT=\"\"
-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1\" -DSTDC_HEADERS=1
-DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
-DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1
-DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1
-DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.8\" "-DHAVE_BOOST=/**/"
"-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DHAVE_GSL -I/usr/include
-DMMDB_HAS_LINK_DISTANCE -fopenmp
-DPKGDATADIR=\"/usr/local/share/coot\" -DUSE_LIBPNG=1
-I/usr/include/libpng16 -g -O2 -Wall -Wno-unused -std=c++11 -MT
residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c
residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o
residue_by_phi_psi.cc: In member function ‘void
coot::residue_by_phi_psi::init_phi_psi_plot()’:
residue_by_phi_psi.cc:869:37: error: ‘All2’ is not a member of
‘clipper::Ramachandran’
869 | rama.init(clipper::Ramachandran::All2);
| ^~~~
residue_by_phi_psi.cc:871:41: error: ‘Pro2’ is not a member of
‘clipper::Ramachandran’
871 | rama_pro.init(clipper::Ramachandran::Pro2);
| ^~~~
make[1]: *** [Makefile:1324: residue_by_phi_psi.lo] Error 1
make[1]: Leaving directory '/home/hari-verve/coot-1/ligand'
make: *** [Makefile:723: all-recursive] Error 1
"""
On Mon, Jun 13, 2022 at 4:56 PM Paul Emsley
<pems...@mrc-lmb.cam.ac.uk> wrote:
On 13/06/2022 18:40, Giacomo Fiorin wrote:
> FYI while I'm still going through dependencies from Ubuntu 20.04
packages, I also tried CentOS 7 again by installing guile-devel to
circumvent the script's auto-build of GUILE, and it builds Coot
successfully. However, when I launch it I see a splash screen and
the following messages, after which Coot exits with error.
>
> I'll try to move forward with Ubuntu 20.04, but if support for
RHEL/CentOS 7 is restored it would be very helpful. Thanks!
Try setting your path so that
/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3/bin
is the first element
Paul.
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