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The following page has been changed by allenday:
http://wiki.apache.org/hadoop/Hbase/MapReduce

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  Running mapreduce jobs that have hbase as source or sink, you'll need to 
specify source/sink table and column names in your configuration.
  
  Reading from hbase, the !TableInputFormat asks hbase for the list of regions 
and makes a map-per-region.  Writing, it may make sense to avoid the reduce 
step and write back into hbase from inside your map.  You'd do this when your 
job does not need the sort and collation that MR does inside in its reduce; on 
insert, hbase sorts so no point double-sorting (and shuffling data around your 
MR cluster) unless you need to.  If you do not need the reduce, you might just 
have your map emit counts of records processed just so the framework can emit 
that nice report of records processed when the job is done.  See example code 
below.  If running the reduce step makes sense in  your case, its better to 
have lots of reducers so load is spread across the hbase cluster.
+ 
+ == Example to map rows/column families between two HTables ==
+ 
+ Here's some sample code from [http://spicylogic.com/allenday/blog Allen Day] 
that will iterate over all rows in one table for specified column families and 
insert those rows/columns to a second table.
+ 
+ {{{
+ import java.io.IOException;
+ 
+ public class BulkCopy extends TableMap<Text, Text> implements Tool {
+   static final String NAME = "bulkcopy";  
+   private Configuration conf;
+   
+   public void map(ImmutableBytesWritable row, RowResult value, 
OutputCollector<Text, Text> output, Reporter reporter) throws IOException {
+     HTable table = new HTable(new HBaseConfiguration(), 
conf.get("output.table"));
+     if ( table == null ) {
+       throw new IOException("output table is null");
+     }
+ 
+     BatchUpdate bu = new BatchUpdate( row.get() );
+ 
+     boolean content = false;
+     for (Map.Entry<byte [], Cell> e: value.entrySet()) {
+       Cell cell = e.getValue();
+       if (cell != null && cell.getValue().length > 0) {
+         bu.put(e.getKey(), cell.getValue());
+       }
+     }
+     table.commit( bu );
+   }
+ 
+   public JobConf createSubmittableJob(String[] args) throws IOException {
+     JobConf c = new JobConf(getConf(), BulkExport.class);
+     //table = new HTable(new HBaseConfiguration(), args[2]);
+     c.set("output.table", args[2]);
+     c.setJobName(NAME);
+     // Columns are space delimited
+     StringBuilder sb = new StringBuilder();
+     final int columnoffset = 3;
+     for (int i = columnoffset; i < args.length; i++) {
+       if (i > columnoffset) {
+         sb.append(" ");
+       }
+       sb.append(args[i]);
+     }
+     // Second argument is the table name.
+     TableMap.initJob(args[1], sb.toString(), this.getClass(),
+     Text.class, Text.class, c);
+     c.setReducerClass(IdentityReducer.class);
+     // First arg is the output directory.
+     c.setOutputPath(new Path(args[0]));
+     return c;
+   }
+   
+   static int printUsage() {
+     System.out.println(NAME +" <outputdir> <input tablename> <output 
tablename> <column1> [<column2>...]");
+     return -1;
+   }
+   
+   public int run(final String[] args) throws Exception {
+     // Make sure there are at least 3 parameters
+     if (args.length < 3) {
+       System.err.println("ERROR: Wrong number of parameters: " + args.length);
+       return printUsage();
+     }
+     JobClient.runJob(createSubmittableJob(args));
+     return 0;
+   }
+ 
+   public Configuration getConf() {
+     return this.conf;
+   }
+ 
+   public void setConf(final Configuration c) {
+     this.conf = c;
+   }
+ 
+   public static void main(String[] args) throws Exception {
+     //String[] aa = {"/tmp/foobar", "M2", "M3", "R:"};
+     int errCode = ToolRunner.run(new HBaseConfiguration(), new BulkCopy(), 
args);
+     System.exit(errCode);
+   }
+ }
+ }}}
+ 
  
  == Sample running HBase inserts out of Map Task ==
  Here's sample code from Andrew Purtell that does HBase insert inside in the 
mapper rather than via TableReduce.

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