This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear TWH, This is a computer-generated error report created automatically by CPANPLUS, version 0.055. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Tue Jun 21 08:58:35 2005] Trying to get 'file://ftp/pub/CPAN/authors/id/T/TW/TWH/Bio-GMOD-0.027.tar.gz' [MSG] [Tue Jun 21 08:58:35 2005] Trying to get 'file://ftp/pub/CPAN/authors/id/T/TW/TWH/CHECKSUMS' [MSG] [Tue Jun 21 08:58:36 2005] Checksum matches for 'Bio-GMOD-0.027.tar.gz' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/gmod_check_versions.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/gmod_fetch_genes.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/gmod_monitor_installation-wormbase.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/gmod_monitor_installation.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/gmod_standard_urls.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/gmod_update_installation-wormbase.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/bin/gmod_update_installation.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/cgi-bin/' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/cgi-bin/defaults.wormbase.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/cgi-bin/README' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/cgi-bin/version.wormbase.PLS' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/Changes' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/conf/' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/conf/wormbase_update_defaults.cfg' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/conf/wormbase_update_defaults.private.cfg' [MSG] [Tue Jun 21 08:58:53 2005] Extracted 'Bio-GMOD-0.027/docs/' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/docs/Bio-GMOD-introduction.pod' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/docs/CPAN-namespace_proposal.txt' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/dtd/' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/dtd/defaults.dtd' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/dtd/version.dtd' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Adaptor/' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Adaptor/FlyBase.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Adaptor/generic.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Adaptor/SGD.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Adaptor/WormBase.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Adaptor.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Archive/' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Archive/WormBase.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Archive.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Monitor/' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Monitor/acedb.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Monitor/blat.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Monitor/httpd.pm' [MSG] [Tue Jun 21 08:58:54 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Monitor/mysqld.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Monitor/WormBase.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Monitor.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Update/' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Update/WormBase.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Admin/Update.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Query/' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Query/FlyBase.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Query/WormBase.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Query.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/StandardURLs.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Util/' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Util/CheckVersions/' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Util/CheckVersions/WormBase.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Util/CheckVersions.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Util/Mirror.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Util/Rearrange.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD/Util/Status.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/GMOD.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/install_util/' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/install_util/cgi_install.PLS' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/install_util/conf_install.PLS' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/install_util/gbrowse_ppm_install.PLS' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/install_util/GuessDirectories.pm' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/install_util/htdocs_install.PLS' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/Makefile.PL' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/MANIFEST' [MSG] [Tue Jun 21 08:58:55 2005] Extracted 'Bio-GMOD-0.027/META.yml' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/README' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/acedb.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/Adaptor.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/Archive.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/BioGMOD.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/CheckVersions.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/CheckVersionsWormBase.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/httpd.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/Mirror.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/More.pm' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/mysqld.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/Query.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/QueryWormBase.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/Rearrange.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/StandardURLs.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/Status.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/Update.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/t/UpdateWormBase.t' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/TODO' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/xml/' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/xml/defaults.xml' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio-GMOD-0.027/xml/supported_mods.xml' [MSG] [Tue Jun 21 08:58:56 2005] Extracted 'Bio::GMOD' to '/net/sunu991/disc1/home/.cpanplus/5.8.5/build/Bio-GMOD-0.027' [MSG] [Tue Jun 21 08:59:13 2005] ** Bio::GMOD::Monitor Tests ** Do you want to run the Bio::GMOD::Monitor::* tests (further configuration follows) y/n [n] n ---------------------------------------------- Bio::GMOD File Paths BIN /usr/local/bin NONROOT MOD CGIBIN (Run perl Makefile.PL -h for help on changing) ---------------------------------------------- Checking if your kit is complete... Looks good Writing Makefile for Bio::GMOD [MSG] [Tue Jun 21 09:01:17 2005] cp GMOD/Admin/Archive/WormBase.pm blib/lib/Bio/GMOD/Admin/Archive/WormBase.pm cp GMOD/Admin/Monitor/WormBase.pm blib/lib/Bio/GMOD/Admin/Monitor/WormBase.pm cp GMOD/Admin/Monitor/httpd.pm blib/lib/Bio/GMOD/Admin/Monitor/httpd.pm cp GMOD/Adaptor.pm blib/lib/Bio/GMOD/Adaptor.pm cp GMOD/Admin/Monitor/mysqld.pm blib/lib/Bio/GMOD/Admin/Monitor/mysqld.pm cp GMOD/Admin/Update.pm blib/lib/Bio/GMOD/Admin/Update.pm cp GMOD/Adaptor/FlyBase.pm blib/lib/Bio/GMOD/Adaptor/FlyBase.pm cp GMOD/Adaptor/SGD.pm blib/lib/Bio/GMOD/Adaptor/SGD.pm cp GMOD/Util/CheckVersions/WormBase.pm blib/lib/Bio/GMOD/Util/CheckVersions/WormBase.pm cp GMOD/Admin/Update/WormBase.pm blib/lib/Bio/GMOD/Admin/Update/WormBase.pm cp GMOD/Util/Status.pm blib/lib/Bio/GMOD/Util/Status.pm cp GMOD/Query.pm blib/lib/Bio/GMOD/Query.pm cp GMOD/Util/Mirror.pm blib/lib/Bio/GMOD/Util/Mirror.pm cp GMOD/Adaptor/WormBase.pm blib/lib/Bio/GMOD/Adaptor/WormBase.pm cp GMOD/Util/CheckVersions.pm blib/lib/Bio/GMOD/Util/CheckVersions.pm cp GMOD/Admin/Monitor/blat.pm blib/lib/Bio/GMOD/Admin/Monitor/blat.pm cp GMOD/Query/FlyBase.pm blib/lib/Bio/GMOD/Query/FlyBase.pm cp GMOD/Util/Rearrange.pm blib/lib/Bio/GMOD/Util/Rearrange.pm cp GMOD/Query/WormBase.pm blib/lib/Bio/GMOD/Query/WormBase.pm cp GMOD/Adaptor/generic.pm blib/lib/Bio/GMOD/Adaptor/generic.pm cp GMOD/Admin/Monitor/acedb.pm blib/lib/Bio/GMOD/Admin/Monitor/acedb.pm cp GMOD/Admin/Archive.pm blib/lib/Bio/GMOD/Admin/Archive.pm cp GMOD/Admin/Monitor.pm blib/lib/Bio/GMOD/Admin/Monitor.pm cp GMOD.pm blib/lib/Bio/GMOD.pm cp GMOD/StandardURLs.pm blib/lib/Bio/GMOD/StandardURLs.pm /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" bin/gmod_fetch_genes.PLS bin/gmod_fetch_genes.pl Extracting gmod_fetch_genes.pl (with variable substitutions) cp bin/gmod_fetch_genes.pl blib/script/gmod_fetch_genes.pl /usr/local/perl-5.8.5/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/gmod_fetch_genes.pl /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" bin/gmod_update_installation.PLS bin/gmod_update_installation.pl Extracting gmod_update_installation.pl (with variable substitutions) cp bin/gmod_update_installation.pl blib/script/gmod_update_installation.pl /usr/local/perl-5.8.5/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/gmod_update_installation.pl /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" bin/gmod_check_versions.PLS bin/gmod_check_versions.pl Extracting gmod_check_versions.pl (with variable substitutions) cp bin/gmod_check_versions.pl blib/script/gmod_check_versions.pl /usr/local/perl-5.8.5/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/gmod_check_versions.pl /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" bin/gmod_monitor_installation-wormbase.PLS bin/gmod_monitor_installation-wormbase.pl Extracting gmod_monitor_installation-wormbase.pl (with variable substitutions) cp bin/gmod_monitor_installation-wormbase.pl blib/script/gmod_monitor_installation-wormbase.pl /usr/local/perl-5.8.5/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/gmod_monitor_installation-wormbase.pl /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" bin/gmod_monitor_installation.PLS bin/gmod_monitor_installation.pl Extracting gmod_monitor_installation.pl (with variable substitutions) cp bin/gmod_monitor_installation.pl blib/script/gmod_monitor_installation.pl /usr/local/perl-5.8.5/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/gmod_monitor_installation.pl /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" bin/gmod_update_installation-wormbase.PLS bin/gmod_update_installation-wormbase.pl Extracting gmod_update_installation-wormbase.pl (with variable substitutions) cp bin/gmod_update_installation-wormbase.pl blib/script/gmod_update_installation-wormbase.pl /usr/local/perl-5.8.5/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/gmod_update_installation-wormbase.pl /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" bin/gmod_standard_urls.PLS bin/gmod_standard_urls.pl Extracting gmod_standard_urls.pl (with variable substitutions) cp bin/gmod_standard_urls.pl blib/script/gmod_standard_urls.pl /usr/local/perl-5.8.5/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/gmod_standard_urls.pl Manifying blib/man1/gmod_fetch_genes.pl.1 Manifying blib/man1/gmod_update_installation.pl.1 Manifying blib/man1/gmod_check_versions.pl.1 Manifying blib/man1/gmod_monitor_installation-wormbase.pl.1 Manifying blib/man1/gmod_monitor_installation.pl.1 Manifying blib/man1/gmod_update_installation-wormbase.pl.1 Manifying blib/man1/gmod_standard_urls.pl.1 Manifying blib/man3/Bio::GMOD::Admin::Monitor::WormBase.3 Manifying blib/man3/Bio::GMOD::Admin::Archive::WormBase.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::httpd.3 Manifying blib/man3/Bio::GMOD::Adaptor.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::mysqld.3 Manifying blib/man3/Bio::GMOD::Admin::Update.3 Manifying blib/man3/Bio::GMOD::Adaptor::FlyBase.3 Manifying blib/man3/Bio::GMOD::Adaptor::SGD.3 Manifying blib/man3/Bio::GMOD::Util::CheckVersions::WormBase.3 Manifying blib/man3/Bio::GMOD::Admin::Update::WormBase.3 Manifying blib/man3/Bio::GMOD::Util::Status.3 Manifying blib/man3/Bio::GMOD::Query.3 Manifying blib/man3/Bio::GMOD::Util::Mirror.3 Manifying blib/man3/Bio::GMOD::Adaptor::WormBase.3 Manifying blib/man3/Bio::GMOD::Util::CheckVersions.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::blat.3 Manifying blib/man3/Bio::GMOD::Util::Rearrange.3 Manifying blib/man3/Bio::GMOD::Query::FlyBase.3 Manifying blib/man3/Bio::GMOD::Query::WormBase.3 Manifying blib/man3/Bio::GMOD::Adaptor::generic.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::acedb.3 Manifying blib/man3/Bio::GMOD::Admin::Archive.3 Manifying blib/man3/Bio::GMOD.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor.3 Manifying blib/man3/Bio::GMOD::StandardURLs.3 /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" cgi-bin/defaults.wormbase.PLS cgi-bin/defaults.wormbase Extracting defaults.wormbase (with variable substitutions) /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" cgi-bin/version.wormbase.PLS cgi-bin/version.wormbase Extracting version.wormbase (with variable substitutions) /usr/local/perl-5.8.5/bin/perl "-Iblib/arch" "-Iblib/lib" install_util/cgi_install.PLS install_util/cgi_install.pl Extracting cgi_install.pl (with variable substitutions) [ERROR] [Tue Jun 21 09:03:43 2005] MAKE TEST failed: No such file or directory PERL_DL_NONLAZY=1 /usr/local/perl-5.8.5/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/acedb....................Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at blib/lib/Bio/GMOD/Admin/Monitor/acedb.pm line 7. Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at (eval 3) line 2. ok t/Adaptor..................Use of uninitialized value in concatenation (.) or string at blib/lib/Bio/GMOD/Adaptor/WormBase.pm line 15. ok t/Archive..................Subroutine create_archive redefined at blib/lib/Bio/GMOD/Admin/Archive.pm line 128. ok t/BioGMOD..................Use of uninitialized value in concatenation (.) or string at blib/lib/Bio/GMOD/Adaptor/WormBase.pm line 15. ok t/CheckVersions............Use of uninitialized value in concatenation (.) or string at blib/lib/Bio/GMOD/Adaptor/WormBase.pm line 15. 500 EOF when chunk header expected http://www.wormbase.org/dtd/bio-gmod/version.dtd Handler couldn't resolve external entity at line 2, column 79, byte 118 error in processing external entity reference at line 2, column 79, byte 118 at /usr/local/perl-5.8.5/lib/site_perl/5.8.5/sun4-solaris-thread-multi/XML/Parser.pm line 187 # Looks like you planned 4 tests but only ran 3. # Looks like your test died just after 3. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED test 4 Failed 1/4 tests, 75.00% okay t/CheckVersionsWormBase....Use of uninitialized value in concatenation (.) or string at blib/lib/Bio/GMOD/Adaptor/WormBase.pm line 15. 500 EOF when chunk header expected http://www.wormbase.org/dtd/bio-gmod/version.dtd Handler couldn't resolve external entity at line 2, column 79, byte 118 error in processing external entity reference at line 2, column 79, byte 118 at /usr/local/perl-5.8.5/lib/site_perl/5.8.5/sun4-solaris-thread-multi/XML/Parser.pm line 187 # Looks like you planned 4 tests but only ran 3. # Looks like your test died just after 3. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED test 4 Failed 1/4 tests, 75.00% okay t/httpd....................Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at blib/lib/Bio/GMOD/Admin/Monitor/httpd.pm line 7. Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at (eval 3) line 2. ok t/Mirror...................[2005 Jun 21 09:02] Downloading file README... ok t/mysqld...................Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at blib/lib/Bio/GMOD/Admin/Monitor/mysqld.pm line 6. Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at (eval 3) line 2. ok t/Query....................Useless use of string in void context at blib/lib/Bio/GMOD/Query.pm line 29. ok t/QueryWormBase............ # Failed test (t/QueryWormBase.t at line 33) # Tried to use 'Bio::GMOD::Query::WormBase'. # Error: Can't locate Ace.pm in @INC (@INC contains: t .. . ./blib/lib /net/sunu991/disc1/.cpanplus/5.8.5/build/Bio-GMOD-0.027/blib/lib /net/sunu991/disc1/.cpanplus/5.8.5/build/Bio-GMOD-0.027/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Apache-SiteControl-0.47/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/POE-Component-Server-IRC-0.2/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Test-TempDatabase-0.04/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Mobile-UserAgent-1.04/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Jcode-2.01/blib/lib /net/sunu991/disc1/.cpanplus/5.8.5/build/XML-RSS-LibXML-0.01/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/IO-Util-1.46/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Apache-Session-Wrapper-0.21/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Test-HTTP-Server-Simple-0.01/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Class-Gomor-Hash-0.22/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Class-Gomor-Hash-0.22/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/DBIx-SQLite-Simple-0.30/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/DBIx-SQLite-Simple-0.30/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/RunApp-0.12/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/RunApp-0.12/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/RunApp-Simple-0.03/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Test-Base-0.43/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/CGI-Application-4.01/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/XML-API-0.05/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/XML-API-0.05/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/NCGI-0.02/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/DBD-SQLite-1.09/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/AI-Prolog-0.7/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Test-Assertions-1.051/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Test-Assertions-1.051/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Schedule-Advisory-1.002/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/XML-SAX-Writer-0.44/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/CGI-Application-Plugin-CompressGzip-0.02/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/CGI-Minimal-1.16/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/CGI-Minimal-1.16/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Posy-0.97/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Posy-0.97/blib/arch /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Posy-Plugin-CgiCarp-0.6201/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Set-Object-1.11_02/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Perl6-Contexts-0.4/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/HTTP-MobileAgent-0.23_03/blib/lib /net/sunu991/disc1/home/.cpanplus/5.8.5/build/Bio-GMOD-0.027/blib/lib /usr/local/perl-5.8.5/lib/5.8.5/sun4-solaris-thread-multi /usr/local/perl-5.8.5/lib/5.8.5 /usr/local/perl-5.8.5/lib/site_perl/5.8.5/sun4-solaris-thread-multi /usr/local/perl-5.8.5/lib/site_perl/5.8.5 /usr/local/perl-5.8.5/lib/site_perl) at blib/lib/Bio/GMOD/Query/WormBase.pm line 5. # BEGIN failed--compilation aborted at t/QueryWormBase.t line 33. # Compilation failed in require at (eval 3) line 2. # BEGIN failed--compilation aborted at (eval 3) line 2. # Looks like you failed 1 test of 1. dubious Test returned status 1 (wstat 256, 0x100) DIED. FAILED test 1 Failed 1/1 tests, 0.00% okay t/Rearrange................ok t/StandardURLs.............Use of uninitialized value in concatenation (.) or string at blib/lib/Bio/GMOD/Adaptor/WormBase.pm line 15. ok t/Status...................ok t/Update...................Use of uninitialized value in concatenation (.) or string at blib/lib/Bio/GMOD/Adaptor/WormBase.pm line 15. [2005 Jun 21 09:03] Creating temporary directory at t/tmpdir/WS144... [2005 Jun 21 09:03] Successfully created temporary directory... [2005 Jun 21 09:03] Sufficient space to install test (0.01 GB required; 0.83 GB available)... ok t/UpdateWormBase...........ok Failed Test Stat Wstat Total Fail Failed List of Failed ------------------------------------------------------------------------------- t/CheckVersions.t 255 65280 4 2 50.00% 4 t/CheckVersionsWormBase.t 255 65280 4 2 50.00% 4 t/QueryWormBase.t 1 256 1 1 100.00% 1 Failed 3/16 test scripts, 81.25% okay. 3/60 subtests failed, 95.00% okay. make: *** [test_dynamic] Error 29 MISSING PREREQUISITES: It was observed that the test suite seem to fail without these modules: Ace As such, adding the prerequisite module(s) to 'PREREQ_PM' in your Makefile.PL should solve this problem. For example: WriteMakefile( AUTHOR => 'TWH ([EMAIL PROTECTED])', ... # other information PREREQ_PM => { 'Ace' => '0', # or a minimum working version } ); If you are interested in making a more flexible Makefile.PL that can probe for missing dependencies and install them, ExtUtils::AutoInstall at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be worth a look. Thanks! :-) PREREQUISITES: Here is a list of prerequisites you specified and versions we managed to load: LWP::UserAgent 2.033 MIME::Lite 3.01 Net::SMTP 2.29 ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.03. -- Summary of my perl5 (revision 5 version 8 subversion 5) configuration: Platform: osname=solaris, osvers=2.9, archname=sun4-solaris-thread-multi uname='sunos sunu991 5.9 generic_112233-12 sun4u sparc sunw,ultra-5_10 solaris ' config_args='-de -Dusethreads -Dcc=gcc' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='gcc', ccflags ='-D_REENTRANT -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O', cppflags='-D_REENTRANT -fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='3.3.2', gccosandvers='solaris2.8' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=4321 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=8, prototype=define Linker and Libraries: ld='gcc', ldflags =' -L/usr/local/lib ' libpth=/usr/local/lib /usr/lib /usr/ccs/lib libs=-lsocket -lnsl -ldl -lm -lpthread -lc perllibs=-lsocket -lnsl -ldl -lm -lpthread -lc libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' ' cccdlflags='-fPIC', lddlflags='-G -L/usr/local/lib'
