This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear ALEXMASS, This is a computer-generated error report created automatically by CPANPLUS, version 0.074. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Mon Sep 25 10:17:24 2006] Trying to get 'http://www.cpan.org/authors/id/A/AL/ALEXMASS/CHECKSUMS' [MSG] [Mon Sep 25 10:17:27 2006] Checksum matches for 'InSilicoSpectro-0.9.25.tar.gz' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils.t' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/XML/' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/XML/144.pidres.xml' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/XML/a.indexMaker.xml' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/XML/SaxIndexMaker.t' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/XML/testSaxIndexMaker.pl' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/a.txt' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/a.zip' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/b.txt' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/c.txt' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/a.fasta.gz' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/a.indexMaker.xml' [MSG] [Mon Sep 25 10:17:29 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/testFiles.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Utils/testIO.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/test1' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/test2' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/calHodges.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/paramPI.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/fitip.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/paramRT.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/fitkrok.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/406.dat' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/coef.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/expdata' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/Petritis.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/rtset.dtd' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/rtset.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/Hodges.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/krok.dat' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/fitguo.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/pidata.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/nnet.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/piset.dtd' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/piset.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/fitpet.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/data/calPetritis.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testMSMSOutLegend.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcDigest.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testMSMSOutLatex.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/meuh.pkl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcDigestOOP.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testPeptide.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testAASequence.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/insilicodef-test.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcPMFMatchOOP.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcMatch.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcMatchOOP.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCleavEnzyme.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testMSMSOutText.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testModRes.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcFragOOP.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/examples_rt_pi' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testSequence.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcVarpept.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcFrag.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/listfiles' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testMSMSOutHtml.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testHodges.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testMSMSOutPlot.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testIsoelPoint.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testPetritis.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico/testCalcPMFMatch.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra.t' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/InSilico.t' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/MSFilter.t' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testMSFilterCollection.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/example.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testMSFilterDirectValue.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_5_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_6_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_5-15.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_algorithm.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_algorithm.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_7_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_10_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_16_result.idj.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_8_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_collection.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_collection.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_algorithm_2.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_11_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_9_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_12_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_1_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_10.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_11.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_12.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_13.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_14.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_15.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_16.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_1-4.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_13_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_2_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_14_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_3_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_16.idj.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_15_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_1.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_2.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_4_result.mgf' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_3.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_4.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_5.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_6.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_7.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_8.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testData/test_9.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/Filter/testMSFilterAlgorithm.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/a.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/testPeakDescriptor.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/testSpectra.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/myo_ms2_1.04.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/testExpSpectrum.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/t/Spectra/166.dta' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/digestorHome.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/showEnv.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/cgiComputePI.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/cgiComputeRT.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/fragmentatorHome.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/CGIUtils.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/cgiInSilicoDef.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/cgiConvertSpectra.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/modifList.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/DefEnv.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/fragmentator.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/cgi/digestor.pl' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Utils/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Utils/XML/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Utils/XML/SaxIndexMaker.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Utils/Files.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Utils/io.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra.pod' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/MSMSOutput.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/PMFMatch.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/TermIonSeries.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/Peptide.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/CleavEnzyme.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/IsoelPoint.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/RetentionTimer.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/MassCalculator.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/IonSeries.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/MSMSTheoSpectrum.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/RetentionTimer/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/RetentionTimer/Petritis.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/RetentionTimer/Hodges.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/RetentionTimer/hodges_coef.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/AASequence.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/ModRes.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/Sequence.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/ExpCalibrator.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico/InternIonSeries.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/config/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/config/RESID.insilicodef.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/config/insilicodef.xml' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/InSilico.pod' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Utils.pod' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/Filter/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/Filter/MSFilterDirectValue.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/Filter/MSFilter.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/Filter/MSFilterCollection.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/Filter/MSFilterAlgorithm.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/MSSpectra.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/ExpSpectrum.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/PeakDescriptor.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/MSRun.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/PhenyxPeakDescriptor.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/MSMSCmpd.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/lib/InSilicoSpectro/Spectra/MSMSSpectra.pm' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/README' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/' [MSG] [Mon Sep 25 10:17:30 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/convertSpectra.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/filterPeptSpectra.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/mascot2pept.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/getIonIntensities.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/extractUniquePeptSpectra.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/example.peptSpectra.xml' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/example.idr.xml' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/idr2pept.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/ionStat.R' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/peptSpectra.dtd' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/splitPeptSpectraAtRandom.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/fragErrorDistr.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/peptSpectra/parentErrorDistr.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/importResid.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/split-mgf.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/indexXml.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/computePI.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/scripts/computeRT.pl' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/Makefile.PL' [MSG] [Mon Sep 25 10:17:31 2006] Extracted 'InSilicoSpectro-0.9.25/META.yml' [MSG] [Mon Sep 25 10:17:33 2006] Extracted 'InSilicoSpectro' to 'C:\Documents and Settings\Sasha\Application Data\.cpanplus\5.8.7\build\InSilicoSpectro-0.9.25' [MSG] [Mon Sep 25 10:17:46 2006] Writing Makefile for InSilicoSpectro Warning: prerequisite XML::SemanticDiff 0 not found. [MSG] [Mon Sep 25 10:17:46 2006] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Mon Sep 25 10:17:46 2006] Module 'InSilicoSpectro' requires 'XML::SemanticDiff' version '0' to be installed [MSG] [Mon Sep 25 10:17:46 2006] Trying to get 'http://www.cpan.org/authors/id/K/KH/KHAMPTON/XML-SemanticDiff-0.95.tar.gz' [MSG] [Mon Sep 25 10:17:48 2006] Trying to get 'http://www.cpan.org/authors/id/K/KH/KHAMPTON/CHECKSUMS' [MSG] [Mon Sep 25 10:17:49 2006] Checksum matches for 'XML-SemanticDiff-0.95.tar.gz' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/06pass_to_handler.t' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/02load_xml.t' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/05simple_handler.t' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/01basic.t' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/07pitest.t' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/04namespaces.t' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/t/03simple_compare.t' [MSG] [Mon Sep 25 10:17:49 2006] Extracted 'XML-SemanticDiff-0.95/eg/' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/eg/camelids2.xml' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/eg/camelids.xml' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/eg/xmlsemdiff' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/MANIFEST' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/Changes' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/Makefile.PL' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/lib/' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/lib/XML/' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/lib/XML/SemanticDiff/' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/lib/XML/SemanticDiff/BasicHandler.pm' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML-SemanticDiff-0.95/SemanticDiff.pm' [MSG] [Mon Sep 25 10:17:50 2006] Extracted 'XML::SemanticDiff' to 'C:\Documents and Settings\Sasha\Application Data\.cpanplus\5.8.7\build\XML-SemanticDiff-0.95' [MSG] [Mon Sep 25 10:17:56 2006] Checking if your kit is complete... Looks good Writing Makefile for XML::SemanticDiff [MSG] [Mon Sep 25 10:17:56 2006] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Mon Sep 25 10:19:11 2006] cp lib/XML/SemanticDiff/BasicHandler.pm blib\lib\XML\SemanticDiff\BasicHandler.pm cp SemanticDiff.pm blib\lib\XML\SemanticDiff.pm C:\Perl\bin\perl.exe -MExtUtils::Command -e cp eg/xmlsemdiff blib\script\xmlsemdiff pl2bat.bat blib\script\xmlsemdiff Microsoft (R) Program Maintenance Utility Version 1.50 Copyright (c) Microsoft Corp 1988-94. All rights reserved. [MSG] [Mon Sep 25 10:19:47 2006] MAKE TEST passed: C:\Perl\bin\perl.exe -MExtUtils::Command -e cp eg/xmlsemdiff blib\script\xmlsemdiff pl2bat.bat blib\script\xmlsemdiff C:\Perl\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib\lib', 'blib\arch')" t/*.t t/01basic..............ok t/02load_xml...........ok t/03simple_compare.....ok t/04namespaces.........ok t/05simple_handler.....ok t/06pass_to_handler....ok t/07pitest.............ok All tests successful. Files=7, Tests=14, 21 wallclock secs ( 0.00 cusr + 0.00 csys = 0.00 CPU) Microsoft (R) Program Maintenance Utility Version 1.50 Copyright (c) Microsoft Corp 1988-94. All rights reserved. [MSG] [Mon Sep 25 10:19:49 2006] Successfully sent 'pass' report for 'XML-SemanticDiff-0.95' [MSG] [Mon Sep 25 10:24:46 2006] cp lib/InSilicoSpectro/Spectra/MSMSCmpd.pm blib\lib\InSilicoSpectro\Spectra\MSMSCmpd.pm cp lib/InSilicoSpectro/Spectra/Filter/MSFilterDirectValue.pm blib\lib\InSilicoSpectro\Spectra\Filter\MSFilterDirectValue.pm cp lib/InSilicoSpectro/InSilico/PMFMatch.pm blib\lib\InSilicoSpectro\InSilico\PMFMatch.pm cp lib/InSilicoSpectro/Utils/io.pm blib\lib\InSilicoSpectro\Utils\io.pm cp lib/InSilicoSpectro/InSilico/RetentionTimer/hodges_coef.xml blib\lib\InSilicoSpectro\InSilico\RetentionTimer\hodges_coef.xml cp lib/InSilicoSpectro/InSilico/Peptide.pm blib\lib\InSilicoSpectro\InSilico\Peptide.pm cp lib/InSilicoSpectro/InSilico/RetentionTimer/Hodges.pm blib\lib\InSilicoSpectro\InSilico\RetentionTimer\Hodges.pm cp lib/InSilicoSpectro/Spectra/MSMSSpectra.pm blib\lib\InSilicoSpectro\Spectra\MSMSSpectra.pm cp lib/InSilicoSpectro/config/RESID.insilicodef.xml blib\lib\InSilicoSpectro\config\RESID.insilicodef.xml cp lib/InSilicoSpectro/Spectra/Filter/MSFilter.pm blib\lib\InSilicoSpectro\Spectra\Filter\MSFilter.pm cp lib/InSilicoSpectro/Spectra.pod blib\lib\InSilicoSpectro\Spectra.pod cp lib/InSilicoSpectro/InSilico/AASequence.pm blib\lib\InSilicoSpectro\InSilico\AASequence.pm cp lib/InSilicoSpectro.pm blib\lib\InSilicoSpectro.pm cp lib/InSilicoSpectro/InSilico/ExpCalibrator.pm blib\lib\InSilicoSpectro\InSilico\ExpCalibrator.pm cp lib/InSilicoSpectro/Spectra/PhenyxPeakDescriptor.pm blib\lib\InSilicoSpectro\Spectra\PhenyxPeakDescriptor.pm cp lib/InSilicoSpectro/InSilico/CleavEnzyme.pm blib\lib\InSilicoSpectro\InSilico\CleavEnzyme.pm cp lib/InSilicoSpectro/InSilico/MSMSTheoSpectrum.pm blib\lib\InSilicoSpectro\InSilico\MSMSTheoSpectrum.pm cp lib/InSilicoSpectro/InSilico/Sequence.pm blib\lib\InSilicoSpectro\InSilico\Sequence.pm cp lib/InSilicoSpectro/Spectra/Filter/MSFilterCollection.pm blib\lib\InSilicoSpectro\Spectra\Filter\MSFilterCollection.pm cp lib/InSilicoSpectro/InSilico/InternIonSeries.pm blib\lib\InSilicoSpectro\InSilico\InternIonSeries.pm cp lib/InSilicoSpectro/config/insilicodef.xml blib\lib\InSilicoSpectro\config\insilicodef.xml cp lib/InSilicoSpectro/InSilico/ModRes.pm blib\lib\InSilicoSpectro\InSilico\ModRes.pm cp lib/InSilicoSpectro/Utils/Files.pm blib\lib\InSilicoSpectro\Utils\Files.pm cp lib/InSilicoSpectro/InSilico/IonSeries.pm blib\lib\InSilicoSpectro\InSilico\IonSeries.pm cp lib/InSilicoSpectro/InSilico/RetentionTimer/Petritis.pm blib\lib\InSilicoSpectro\InSilico\RetentionTimer\Petritis.pm cp lib/InSilicoSpectro/InSilico/TermIonSeries.pm blib\lib\InSilicoSpectro\InSilico\TermIonSeries.pm cp lib/InSilicoSpectro/Spectra/MSSpectra.pm blib\lib\InSilicoSpectro\Spectra\MSSpectra.pm cp lib/InSilicoSpectro/InSilico/MSMSOutput.pm blib\lib\InSilicoSpectro\InSilico\MSMSOutput.pm cp lib/InSilicoSpectro/InSilico/IsoelPoint.pm blib\lib\InSilicoSpectro\InSilico\IsoelPoint.pm cp lib/InSilicoSpectro/Spectra/PeakDescriptor.pm blib\lib\InSilicoSpectro\Spectra\PeakDescriptor.pm cp lib/InSilicoSpectro/Spectra/Filter/MSFilterAlgorithm.pm blib\lib\InSilicoSpectro\Spectra\Filter\MSFilterAlgorithm.pm cp lib/InSilicoSpectro/Spectra/MSRun.pm blib\lib\InSilicoSpectro\Spectra\MSRun.pm cp lib/InSilicoSpectro/InSilico/MassCalculator.pm blib\lib\InSilicoSpectro\InSilico\MassCalculator.pm cp lib/InSilicoSpectro/InSilico/RetentionTimer.pm blib\lib\InSilicoSpectro\InSilico\RetentionTimer.pm cp lib/InSilicoSpectro/Utils/XML/SaxIndexMaker.pm blib\lib\InSilicoSpectro\Utils\XML\SaxIndexMaker.pm cp lib/InSilicoSpectro/Spectra/ExpSpectrum.pm blib\lib\InSilicoSpectro\Spectra\ExpSpectrum.pm cp lib/InSilicoSpectro/Utils.pod blib\lib\InSilicoSpectro\Utils.pod cp lib/InSilicoSpectro/InSilico.pod blib\lib\InSilicoSpectro\InSilico.pod C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/splitPeptSpectraAtRandom.pl blib\script\splitPeptSpectraAtRandom.pl pl2bat.bat blib\script\splitPeptSpectraAtRandom.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/getIonIntensities.pl blib\script\getIonIntensities.pl pl2bat.bat blib\script\getIonIntensities.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/importResid.pl blib\script\importResid.pl pl2bat.bat blib\script\importResid.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/computePI.pl blib\script\computePI.pl pl2bat.bat blib\script\computePI.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/parentErrorDistr.pl blib\script\parentErrorDistr.pl pl2bat.bat blib\script\parentErrorDistr.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/computeRT.pl blib\script\computeRT.pl pl2bat.bat blib\script\computeRT.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/convertSpectra.pl blib\script\convertSpectra.pl pl2bat.bat blib\script\convertSpectra.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/ionStat.R blib\script\ionStat.R pl2bat.bat blib\script\ionStat.R C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/peptSpectra.dtd blib\script\peptSpectra.dtd pl2bat.bat blib\script\peptSpectra.dtd C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/example.idr.xml blib\script\example.idr.xml pl2bat.bat blib\script\example.idr.xml C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/idr2pept.pl blib\script\idr2pept.pl pl2bat.bat blib\script\idr2pept.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/mascot2pept.pl blib\script\mascot2pept.pl pl2bat.bat blib\script\mascot2pept.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/split-mgf.pl blib\script\split-mgf.pl pl2bat.bat blib\script\split-mgf.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/example.peptSpectra.xml blib\script\example.peptSpectra.xml pl2bat.bat blib\script\example.peptSpectra.xml C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/filterPeptSpectra.pl blib\script\filterPeptSpectra.pl pl2bat.bat blib\script\filterPeptSpectra.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/fragErrorDistr.pl blib\script\fragErrorDistr.pl pl2bat.bat blib\script\fragErrorDistr.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/extractUniquePeptSpectra.pl blib\script\extractUniquePeptSpectra.pl pl2bat.bat blib\script\extractUniquePeptSpectra.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/indexXml.pl blib\script\indexXml.pl pl2bat.bat blib\script\indexXml.pl Microsoft (R) Program Maintenance Utility Version 1.50 Copyright (c) Microsoft Corp 1988-94. All rights reserved. [ERROR] [Mon Sep 25 10:28:26 2006] MAKE TEST failed: No such file or directory C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/splitPeptSpectraAtRandom.pl blib\script\splitPeptSpectraAtRandom.pl pl2bat.bat blib\script\splitPeptSpectraAtRandom.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/getIonIntensities.pl blib\script\getIonIntensities.pl pl2bat.bat blib\script\getIonIntensities.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/importResid.pl blib\script\importResid.pl pl2bat.bat blib\script\importResid.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/computePI.pl blib\script\computePI.pl pl2bat.bat blib\script\computePI.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/parentErrorDistr.pl blib\script\parentErrorDistr.pl pl2bat.bat blib\script\parentErrorDistr.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/computeRT.pl blib\script\computeRT.pl pl2bat.bat blib\script\computeRT.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/convertSpectra.pl blib\script\convertSpectra.pl pl2bat.bat blib\script\convertSpectra.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/ionStat.R blib\script\ionStat.R pl2bat.bat blib\script\ionStat.R C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/peptSpectra.dtd blib\script\peptSpectra.dtd pl2bat.bat blib\script\peptSpectra.dtd C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/example.idr.xml blib\script\example.idr.xml pl2bat.bat blib\script\example.idr.xml C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/idr2pept.pl blib\script\idr2pept.pl pl2bat.bat blib\script\idr2pept.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/mascot2pept.pl blib\script\mascot2pept.pl pl2bat.bat blib\script\mascot2pept.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/split-mgf.pl blib\script\split-mgf.pl pl2bat.bat blib\script\split-mgf.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/example.peptSpectra.xml blib\script\example.peptSpectra.xml pl2bat.bat blib\script\example.peptSpectra.xml C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/filterPeptSpectra.pl blib\script\filterPeptSpectra.pl pl2bat.bat blib\script\filterPeptSpectra.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/fragErrorDistr.pl blib\script\fragErrorDistr.pl pl2bat.bat blib\script\fragErrorDistr.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/peptSpectra/extractUniquePeptSpectra.pl blib\script\extractUniquePeptSpectra.pl pl2bat.bat blib\script\extractUniquePeptSpectra.pl C:\Perl\bin\perl.exe -MExtUtils::Command -e cp scripts/indexXml.pl blib\script\indexXml.pl pl2bat.bat blib\script\indexXml.pl C:\Perl\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib\lib', 'blib\arch')" t/*.t t/InSilico....dubious Test returned status 42 (wstat 10752, 0x2a00) DIED. FAILED tests 1-42 Failed 42/44 tests, 4.55% okay (less 2 skipped tests: 0 okay, 0.00%) t/Spectra.....dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 2-3 Failed 2/3 tests, 33.33% okay t/Utils.......dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/InSilico.t 42 10752 44 42 1-42 t/Spectra.t 2 512 3 2 2-3 t/Utils.t 2 512 2 2 1-2 2 subtests skipped. Failed 3/3 test scripts. 46/49 subtests failed. Files=3, Tests=49, 13 wallclock secs ( 0.00 cusr + 0.00 csys = 0.00 CPU) Microsoft (R) Program Maintenance Utility Version 1.50 Copyright (c) Microsoft Corp 1988-94. All rights reserved. ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 7. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 9. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 10. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 12. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 13. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 14. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 16. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 18. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 19. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 21. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 22. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 23. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 24. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 25. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 27. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 28. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 29. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 30. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 32. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 33. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 35. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 37. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 38. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 39. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 41. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 42. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 43. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 45. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 46. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 47. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 49. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 50. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 52. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 53. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 54. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 55. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 57. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 58. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 59. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 60. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 61. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/InSilico.t at line 62. # got: '256' # expected: '0' # Looks like you failed 42 tests of 44. "INSILICOSPECTRO_DEFFILE" ¥ ï¥âáï ¢ãâ॥© ¨«¨ ¢¥è¥© ª®¬ ¤®©, ¨á¯®«ï¥¬®© ¯à®£à ¬¬®© ¨«¨ ¯ ª¥âë¬ ä ©«®¬. # Failed test in t/Spectra.t at line 19. # got: '256' # expected: '0' "INSILICOSPECTRO_DEFFILE" ¥ ï¥âáï ¢ãâ॥© ¨«¨ ¢¥è¥© ª®¬ ¤®©, ¨á¯®«ï¥¬®© ¯à®£à ¬¬®© ¨«¨ ¯ ª¥âë¬ ä ©«®¬. # Failed test in t/Spectra.t at line 20. # got: '256' # expected: '0' # Looks like you failed 2 tests of 3. ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/Utils.t at line 6. # got: '256' # expected: '0' ¨á⥬¥ ¥ 㤠¥âáï ©â¨ ãª § ë© ¯ãâì. # Failed test in t/Utils.t at line 7. # got: '256' # expected: '0' # Looks like you failed 2 tests of 2. Failed 3/3 test programs. 46/49 subtests failed. NMAKE : fatal error U1077: 'C:\WINDOWS\system32\cmd.exe' : return code '0x2' Stop. PREREQUISITES: Here is a list of prerequisites you specified and versions we managed to load: Archive::Tar 1.30 Archive::Zip 1.16 Compress::Zlib 1.34 Digest::MD5 2.36 File::Find::Rule 0.30 File::Temp 0.16 GD 2.30 GD::Graph 1.4308 GD::Text 0.86 Getopt::Long 2.35 MIME::Base64 3.07 XML::Parser 2.34 XML::SemanticDiff 0.95 XML::Twig 3.26 ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. -- Summary of my perl5 (revision 5 version 8 subversion 7) configuration: Platform: osname=MSWin32, osvers=5.0, archname=MSWin32-x86-multi-thread uname='' config_args='undef' hint=recommended, useposix=true, d_sigaction=undef usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cl', ccflags ='-nologo -Gf -W3 -MD -Zi -DNDEBUG -O1 -DWIN32 -D_CONSOLE -DNO_STRICT -DHAVE_DES_FCRYPT -DBUILT_BY_ACTIVESTATE -DNO_HASH_SEED -DUSE_SITECUSTOMIZE -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -DUSE_PERLIO -DPERL_MSVCRT_READFIX', optimize='-MD -Zi -DNDEBUG -O1', cppflags='-DWIN32' ccversion='12.00.8804', gccversion='', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=undef, longlongsize=8, d_longdbl=define, longdblsize=10 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='__int64', lseeksize=8 alignbytes=8, prototype=define Linker and Libraries: ld='link', ldflags ='-nologo -nodefaultlib -debug -opt:ref,icf -libpath:"C:\Perl\lib\CORE" -machine:x86' libpth=\lib libs= oldnames.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib netapi32.lib uuid.lib ws2_32.lib mpr.lib winmm.lib version.lib odbc32.lib odbccp32.lib msvcrt.lib perllibs= oldnames.lib kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib netapi32.lib uuid.lib ws2_32.lib mpr.lib winmm.lib version.lib odbc32.lib odbccp32.lib msvcrt.lib libc=msvcrt.lib, so=dll, useshrplib=yes, libperl=perl58.lib gnulibc_version='undef' Dynamic Linking: dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' ' cccdlflags=' ', lddlflags='-dll -nologo -nodefaultlib -debug -opt:ref,icf -libpath:"C:\Perl\lib\CORE" -machine:x86'
