This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear TIBI, This is a computer-generated error report created automatically by CPANPLUS, version 0.076. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Thu Dec 14 14:13:02 2006] Trying to get 'http://www.cpan.org/authors/id/T/TI/TIBI/Bio-DOOP-DOOP-0.03.tar.gz' [MSG] [Thu Dec 14 14:13:06 2006] Trying to get 'http://www.cpan.org/authors/id/T/TI/TIBI/CHECKSUMS' [MSG] [Thu Dec 14 14:13:10 2006] Checksum matches for 'Bio-DOOP-DOOP-0.03.tar.gz' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/t/' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/t/pod.t' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/t/00-load.t' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/t/pod-coverage.t' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/Util/' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/Util/Search.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/SequenceFeature.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/DOOP.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/ClusterSubset.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/Motif.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/DBSQL.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/Graphics/' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/Graphics/Feature.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/Sequence.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/lib/Bio/DOOP/Cluster.pm' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/README' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/Changes' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/Makefile.PL' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio-DOOP-DOOP/MANIFEST' [MSG] [Thu Dec 14 14:13:11 2006] Extracted 'Bio::DOOP::DOOP' to '/home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP' [MSG] [Thu Dec 14 14:13:13 2006] WARNING: Setting ABSTRACT via file 'lib/Bio/DOOP/DOOP.pm' failed at /home/hybrid/perl588/lib/5.8.8/ExtUtils/MakeMaker.pm line 512 Writing Makefile for Bio::DOOP::DOOP [MSG] [Thu Dec 14 14:13:13 2006] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Thu Dec 14 14:13:15 2006] Skip blib/lib/Bio/DOOP/DBSQL.pm (unchanged) cp lib/Bio/DOOP/Sequence.pm blib/lib/Bio/DOOP/Sequence.pm cp lib/Bio/DOOP/Cluster.pm blib/lib/Bio/DOOP/Cluster.pm cp lib/Bio/DOOP/Graphics/Feature.pm blib/lib/Bio/DOOP/Graphics/Feature.pm cp lib/Bio/DOOP/SequenceFeature.pm blib/lib/Bio/DOOP/SequenceFeature.pm Skip blib/lib/Bio/DOOP/Motif.pm (unchanged) Skip blib/lib/Bio/DOOP/Util/Search.pm (unchanged) cp lib/Bio/DOOP/DOOP.pm blib/lib/Bio/DOOP/DOOP.pm cp lib/Bio/DOOP/ClusterSubset.pm blib/lib/Bio/DOOP/ClusterSubset.pm Manifying blib/man3/Bio::DOOP::DBSQL.3 Manifying blib/man3/Bio::DOOP::Sequence.3 Manifying blib/man3/Bio::DOOP::Graphics::Feature.3 Manifying blib/man3/Bio::DOOP::Cluster.3 Manifying blib/man3/Bio::DOOP::SequenceFeature.3 Manifying blib/man3/Bio::DOOP::Motif.3 Manifying blib/man3/Bio::DOOP::Util::Search.3 Manifying blib/man3/Bio::DOOP::DOOP.3 Manifying blib/man3/Bio::DOOP::ClusterSubset.3 [ERROR] [Thu Dec 14 14:13:17 2006] MAKE TEST failed: Illegal seek PERL_DL_NONLAZY=1 /home/hybrid/perl588/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/00-load......... # Failed test 'use Bio::DOOP::DOOP;' # at t/00-load.t line 6. # Tried to use 'Bio::DOOP::DOOP'. # Error: Can't locate DBI.pm in @INC (@INC contains: /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/lib /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/arch /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib /home/hybrid/perl588/lib/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/5.8.8 /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8 /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8 /home/hybrid/perl588/lib/site_perl . /home/hybrid/perl588/lib/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/5.8.8 /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8 /home/hybrid/perl588/lib/site_perl) at /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/lib/Bio/DOOP/DBSQL.pm line 5. # BEGIN failed--compilation aborted at t/00-load.t line 6. # Compilation failed in require at /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/lib/Bio/DOOP/DOOP.pm line 5. # BEGIN failed--compilation aborted at /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/lib/Bio/DOOP/DOOP.pm line 5. # Compilation failed in require at (eval 3) line 2. # BEGIN failed--compilation aborted at (eval 3) line 2. # Failed test 'use Bio::DOOP::Graphics::Feature;' # at t/00-load.t line 14. # Tried to use 'Bio::DOOP::Graphics::Feature'. # Error: Can't locate GD.pm in @INC (@INC contains: /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/lib /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/arch /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib /home/hybrid/perl588/lib/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/5.8.8 /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8 /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8 /home/hybrid/perl588/lib/site_perl . /home/hybrid/perl588/lib/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/5.8.8 /home/hybrid/perl588/lib/site_perl/5.8.8/i686-linux-thread-multi-64int-ld /home/hybrid/perl588/lib/site_perl/5.8.8 /home/hybrid/perl588/lib/site_perl) at /home/hybrid/perl588/.cpanplus/5.8.8/build/Bio-DOOP-DOOP/blib/lib/Bio/DOOP/Graphics/Feature.pm line 5. # BEGIN failed--compilation aborted at t/00-load.t line 14. # Compilation failed in require at (eval 11) line 2. # BEGIN failed--compilation aborted at (eval 11) line 2. Use of uninitialized value in concatenation (.) or string at t/00-load.t line 17. # Testing Bio::DOOP::DOOP , Perl 5.008008, /home/hybrid/perl588/bin/perl # Looks like you failed 2 tests of 9. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1, 9 Failed 2/9 tests, 77.78% okay t/boilerplate..... # Failed test 'README contains boilerplate text' # at t/boilerplate.t line 23. # The README is used... appears on lines 3 # 'version information here' appears on lines 11 # Looks like you failed 1 test of 11. dubious Test returned status 1 (wstat 256, 0x100) DIED. FAILED test 1 Failed 1/11 tests, 90.91% okay t/pod-coverage....skipped all skipped: Test::Pod::Coverage 1.04 required for testing POD coverage t/pod.............skipped all skipped: Test::Pod 1.14 required for testing POD Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/00-load.t 2 512 9 2 1 9 t/boilerplate.t 1 256 11 1 1 2 tests skipped. Failed 2/4 test scripts. 3/20 subtests failed. Files=4, Tests=20, 1 wallclock secs ( 0.96 cusr + 0.06 csys = 1.02 CPU) Failed 2/4 test programs. 3/20 subtests failed. make: *** [test_dynamic] Error 255 MISSING PREREQUISITES: It was observed that the test suite seem to fail without these modules: DBI GD As such, adding the prerequisite module(s) to 'PREREQ_PM' in your Makefile.PL should solve this problem. For example: WriteMakefile( AUTHOR => 'TIBI ([EMAIL PROTECTED])', ... # other information PREREQ_PM => { 'DBI' => '0', # or a minimum working version 'GD' => '0', # or a minimum working version } ); If you are interested in making a more flexible Makefile.PL that can probe for missing dependencies and install them, ExtUtils::AutoInstall at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be worth a look. Thanks! :-) PREREQUISITES: Here is a list of prerequisites you specified and versions we managed to load: Test::More 0.65 ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. -- Summary of my perl5 (revision 5 version 8 subversion 8) configuration: Platform: osname=linux, osvers=2.4.26, archname=i686-linux-thread-multi-64int-ld uname='linux penguin 2.4.26 #1 smp thu jul 1 18:22:25 bst 2004 i686 unknown unknown gnulinux ' config_args='' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=define use64bitall=undef uselongdouble=define usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O2', cppflags='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='3.3.4', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long long', ivsize=8, nvtype='long double', nvsize=12, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags =' -L/usr/local/lib' libpth=/usr/local/lib /lib /usr/lib libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc libc=/lib/libc-2.3.2.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='2.3.2' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E' cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
