This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear EASR, This is a computer-generated error report created automatically by CPANPLUS, version 0.076. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Fri Jan 26 11:40:09 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/onto-perl-0.25.tar.gz' [MSG] [Fri Jan 26 11:40:11 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/CHECKSUMS' [MSG] [Fri Jan 26 11:40:11 2007] Checksum matches for 'onto-perl-0.25.tar.gz' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/pre_cco_taxa.obo' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/ulo_cco.obo' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/nodes_dummy.dmp' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/fake_ulo_cco.obo' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/pre_cco.obo' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/cco-names.html' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/names_dummy.dmp' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test1.obo' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test1.xml' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test2.xml' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test2.owl' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test2.dot' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test2.obo' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test_ulo_cco.owl' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/test_ulo_cco.dot' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/out_cco.obo' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/data/goa_assoc.txt' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/GoaAssociationSet.t' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/Def.t' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/Relationship.t' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/RelationshipType.t' [MSG] [Fri Jan 26 11:40:12 2007] Extracted 'onto-perl-latest/t/TermSet.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/DbxrefSet.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/Term.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/NCBIParser.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/SynonymSet.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/Dbxref.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/Ontology.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/Set.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/Synonym.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/OBOParser.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/GoaAssociation.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/t/GoaParser.t' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/Ontology.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/Term.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/Dbxref.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/GoaAssociation.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/Synonym.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/Def.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/Relationship.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Core/RelationshipType.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Parser/' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Parser/OBOParser.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Parser/NCBIParser.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Parser/GoaParser.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Util/' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Util/DbxrefSet.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Util/SynonymSet.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Util/Set.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Util/GoaAssociationSet.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/CCO/Util/TermSet.pm' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/doc/' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/scripts/' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/scripts/go2owl.pl' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/scripts/names.xsl' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/scripts/obo2xml.pl' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/scripts/xml2html.xsl' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/scripts/obo2owl.pl' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/onto-perl.pod' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/MANIFEST' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/INSTALL' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/Makefile.PL' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/Changes' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/README' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/pm_to_blib' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto-perl-latest/Makefile' [MSG] [Fri Jan 26 11:40:13 2007] Extracted 'onto::perl' to '/home/hybrid/perl594/.cpanplus/5.9.4/build/onto-perl-latest' [MSG] [Fri Jan 26 11:40:15 2007] Writing Makefile for CCO [MSG] [Fri Jan 26 11:40:15 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Fri Jan 26 11:40:20 2007] Manifying blib/man3/onto-perl.3 Manifying blib/man3/CCO::Core::Dbxref.3 Manifying blib/man3/CCO::Util::DbxrefSet.3 Manifying blib/man3/CCO::Core::GoaAssociation.3 Manifying blib/man3/CCO::Core::Relationship.3 Manifying blib/man3/CCO::Util::TermSet.3 Manifying blib/man3/CCO::Core::RelationshipType.3 Manifying blib/man3/CCO::Util::GoaAssociationSet.3 Manifying blib/man3/CCO::Parser::GoaParser.3 Manifying blib/man3/CCO::Util::SynonymSet.3 Manifying blib/man3/CCO::Core::Ontology.3 Manifying blib/man3/CCO::Core::Def.3 Manifying blib/man3/CCO::Core::Synonym.3 Manifying blib/man3/CCO::Util::Set.3 Manifying blib/man3/CCO::Core::Term.3 Manifying blib/man3/CCO::Parser::NCBIParser.3 Manifying blib/man3/CCO::Parser::OBOParser.3 [ERROR] [Fri Jan 26 11:42:08 2007] MAKE TEST failed: Illegal seek PERL_DL_NONLAZY=1 /home/hybrid/perl594/bin/perl5.9.4 "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Dbxref...............ok t/DbxrefSet............ok t/Def..................ok t/GoaAssociation.......ok t/GoaAssociationSet....ok t/GoaParser............ok t/NCBIParser...........ok t/OBOParser............ok t/Ontology.............Can't use string ("2") as an ARRAY ref while "strict refs" in use at t/Ontology.t line 232. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 66-151 Failed 86/151 tests, 43.05% okay t/Relationship.........ok t/RelationshipType.....ok t/Set..................ok t/Synonym..............ok t/SynonymSet...........Can't use string ("0") as an ARRAY ref while "strict refs" in use at t/SynonymSet.t line 27. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 3-33 Failed 31/33 tests, 6.06% okay t/Term.................ok t/TermSet..............Can't use string ("0") as an ARRAY ref while "strict refs" in use at t/TermSet.t line 27. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 3-27 Failed 25/27 tests, 7.41% okay Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/Ontology.t 255 65280 151 172 66-151 t/SynonymSet.t 255 65280 33 62 3-33 t/TermSet.t 255 65280 27 50 3-27 Failed 3/16 test scripts. 142/482 subtests failed. Files=16, Tests=482, 107 wallclock secs (103.32 cusr + 0.78 csys = 104.10 CPU) Failed 3/16 test programs. 142/482 subtests failed. make: *** [test_dynamic] Error 255 ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. -- Summary of my perl5 (revision 5 version 9 subversion 4) configuration: Platform: osname=linux, osvers=2.4.26, archname=i686-linux-thread-multi-64int-ld uname='linux penguin 2.4.26 #1 smp thu jul 1 18:22:25 bst 2004 i686 unknown unknown gnulinux ' config_args='' hint=recommended, useposix=true, d_sigaction=define useithreads=define, usemultiplicity=define useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef use64bitint=define, use64bitall=undef, uselongdouble=define usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O2', cppflags='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='3.3.4', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long long', ivsize=8, nvtype='long double', nvsize=12, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags =' -L/usr/local/lib' libpth=/usr/local/lib /lib /usr/lib libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc libc=/lib/libc-2.3.2.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='2.3.2' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E' cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
