This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear RPETTETT, This is a computer-generated error report created automatically by CPANPLUS, version 0.076. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Tue Jan 30 13:41:52 2007] Trying to get 'http://www.cpan.org/authors/id/R/RP/RPETTETT/Bio-Das-ProServer-2.5.tar.gz' [MSG] [Tue Jan 30 13:41:59 2007] Trying to get 'http://www.cpan.org/authors/id/R/RP/RPETTETT/CHECKSUMS' [MSG] [Tue Jan 30 13:42:00 2007] Checksum matches for 'Bio-Das-ProServer-2.5.tar.gz' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/eg/' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/eg/proserver' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/eg/proserver.ini' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/Changes' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/MANIFEST' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/Makefile.PL' [MSG] [Tue Jan 30 13:42:00 2007] Extracted 'Bio-Das-ProServer-2.5/README' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/bioseq.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/agp.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/csv.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/ensembl.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/getzc.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/wgetz.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/pfetch.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/Transport/.#dbi.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/all_in_group.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/cosmic.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/cosmic_genomic.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/cosmic_ncbi_35.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/decipher.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/ens_genexrefs.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/ens_ncbi_35_morbid.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/ensembl_upload.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/ensgenes.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/gene_pro_db.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/genetarget_db.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/genetrap.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/gensat.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/grouped_db.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/gtfdb.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/haplotype.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/hs34_20_clone.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/hs35_clone.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/image.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv4.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv5.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/interpro.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/mirna.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/mitocheck_oligos.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/mungeonscore.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/pdbStructure.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/pfam.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/ppid.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/pfamAlign.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/pig_ends_all_35.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/proxy.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/simple.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/simpledb.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/simplescore_db.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/snp.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv4.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv5.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/sts.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/styletest.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/swissprot.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/tilepath.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/trace.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/upload_euf.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_array.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_est.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_insmut.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_morpholino.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_tilling.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/hugo.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/CNVDB.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/cegg_dbi.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/chori_243.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/team87_designs.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/jgi_dbi.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/zfish_exons.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/pfamOtherFeatures.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/pfamFullAlign.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor/pfamSeedAlign.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/Config.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceAdaptor.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceHydra.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceHydra/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceHydra/ppid.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceHydra/dbi.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/lib/Bio/Das/ProServer/SourceHydra/simplescoreh_db.pm' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/01-pod-u-like.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/05-config.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/10-sourceadaptor.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/15-escaping.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/16-targets.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/25-alignment.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/10-sourceadaptor-hugo.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/11-transport-dbi.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/11-transport-file.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/11-transport-generic.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/t/11-transport-oracle.t' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_segdup_toronto.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_compugen.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_hum_mus_homol.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_hum_mus_homol2.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_segdup_washufilt.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_segdup_wssd.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_36_compugen.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_toronto_dgv.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_36_segdup_washu.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m33_compugen.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_compugen.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_129AB22.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_bac.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_bacmap.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_choriclone.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_dots.html' [MSG] [Tue Jan 30 13:42:01 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_geneid.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_mgc.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_micer.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_msm.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_nia_genes.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_nodclone.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_refseq.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m34_sgp.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_129AB22.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_choriclone.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_geneid.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_genetrap.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_gnomon.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_mgc.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_micer.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_msm.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_nia_genes.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_nodclone.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_refseq.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_sgp.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_rat34_compugen.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_zfish4_compugen.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_zfish5_compugen.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_segdup_sanger.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_35_segdup_washu.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m35_compugen.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/homepages/ens_m36_compugen.html' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_mgc.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/genetrap.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/cosmic.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/lcr.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/genetrap17.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/refseq.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/operon.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/haplotype_variation.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/cpg_clones.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_35_cpg_clones.xml' [MSG] [Tue Jan 30 13:42:02 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_35_segdup_wssd.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/msm_bacs.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/compugen.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_bac.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_1Mb_clones.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_geneid.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_dots.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_bacmap.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_35_toronto_dgv.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_mgc.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_micer.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_35_aceview.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/fosmid.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_micer.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/decipher.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_sgp.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/nia_genes.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_rat34_bacend.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/gnomon.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_geneid.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_35_hum_mus_homol.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_choriclones.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_129AB22.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_129AB22.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_m34_sgp.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/hugo36.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_nodclones.xml' [MSG] [Tue Jan 30 13:42:03 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_mXX_genetarget.xml' [MSG] [Tue Jan 30 13:42:04 2007] Extracted 'Bio-Das-ProServer-2.5/stylesheets/ens_35_hum_mus_homol2.xml' [MSG] [Tue Jan 30 13:42:04 2007] Extracted 'Bio::Das::ProServer' to '/export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5' [MSG] [Tue Jan 30 13:42:09 2007] Checking if your kit is complete... Looks good Writing Makefile for Bio::Das::ProServer [MSG] [Tue Jan 30 13:42:09 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Tue Jan 30 13:42:22 2007] cp lib/Bio/Das/ProServer/SourceAdaptor/decipher.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/decipher.pm cp lib/Bio/Das/ProServer/SourceAdaptor/cosmic.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/cosmic.pm cp lib/Bio/Das/ProServer/SourceAdaptor/jgi_dbi.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/jgi_dbi.pm cp lib/Bio/Das/ProServer/SourceAdaptor/cosmic_genomic.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/cosmic_genomic.pm cp lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv4.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv4.pm cp lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv5.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/indel_Zv5.pm cp lib/Bio/Das/ProServer/SourceAdaptor/bioseq.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/bioseq.pm cp lib/Bio/Das/ProServer/SourceAdaptor/gensat.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/gensat.pm cp lib/Bio/Das/ProServer/SourceHydra/dbi.pm blib/lib/Bio/Das/ProServer/SourceHydra/dbi.pm cp lib/Bio/Das/ProServer/SourceAdaptor/mirna.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/mirna.pm cp lib/Bio/Das/ProServer/SourceAdaptor/grouped_db.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/grouped_db.pm cp lib/Bio/Das/ProServer/SourceAdaptor/simplescore_db.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/simplescore_db.pm cp lib/Bio/Das/ProServer/SourceAdaptor/chori_243.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/chori_243.pm cp lib/Bio/Das/ProServer/SourceAdaptor/swissprot.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/swissprot.pm cp lib/Bio/Das/ProServer/Config.pm blib/lib/Bio/Das/ProServer/Config.pm cp lib/Bio/Das/ProServer/SourceAdaptor/pfam.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/pfam.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/getz.pm cp lib/Bio/Das/ProServer/SourceAdaptor/image.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/image.pm cp lib/Bio/Das/ProServer/SourceAdaptor/pfamOtherFeatures.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/pfamOtherFeatures.pm cp lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_array.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_array.pm cp lib/Bio/Das/ProServer/SourceAdaptor/hugo.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/hugo.pm cp lib/Bio/Das/ProServer/SourceHydra/simplescoreh_db.pm blib/lib/Bio/Das/ProServer/SourceHydra/simplescoreh_db.pm cp lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_insmut.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_insmut.pm cp lib/Bio/Das/ProServer/SourceAdaptor/team87_designs.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/team87_designs.pm cp lib/Bio/Das/ProServer/SourceAdaptor/hs35_clone.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/hs35_clone.pm cp lib/Bio/Das/ProServer/SourceAdaptor/ens_ncbi_35_morbid.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/ens_ncbi_35_morbid.pm cp lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_est.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_est.pm cp lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv5.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv5.pm cp lib/Bio/Das/ProServer/SourceAdaptor/cosmic_ncbi_35.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/cosmic_ncbi_35.pm cp lib/Bio/Das/ProServer/SourceAdaptor/tilepath.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/tilepath.pm cp lib/Bio/Das/ProServer/SourceAdaptor/pig_ends_all_35.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/pig_ends_all_35.pm cp lib/Bio/Das/ProServer/SourceAdaptor/pfamFullAlign.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/pfamFullAlign.pm cp lib/Bio/Das/ProServer/SourceAdaptor/haplotype.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/haplotype.pm cp lib/Bio/Das/ProServer/SourceHydra/ppid.pm blib/lib/Bio/Das/ProServer/SourceHydra/ppid.pm cp lib/Bio/Das/ProServer/SourceAdaptor/proxy.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/proxy.pm cp lib/Bio/Das/ProServer/SourceAdaptor/all_in_group.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/all_in_group.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/getzc.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/getzc.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/csv.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/csv.pm cp lib/Bio/Das/ProServer/SourceAdaptor/ensembl_upload.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/ensembl_upload.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/wgetz.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/wgetz.pm cp lib/Bio/Das/ProServer/SourceAdaptor/upload_euf.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/upload_euf.pm cp lib/Bio/Das/ProServer/SourceAdaptor/genetarget_db.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/genetarget_db.pm cp lib/Bio/Das/ProServer/SourceAdaptor/ens_genexrefs.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/ens_genexrefs.pm cp lib/Bio/Das/ProServer/SourceAdaptor/gtfdb.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/gtfdb.pm cp lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv4.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/snp_Zv4.pm cp lib/Bio/Das/ProServer/SourceAdaptor/hs34_20_clone.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/hs34_20_clone.pm cp lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_morpholino.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_morpholino.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/pfetch.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/pfetch.pm cp lib/Bio/Das/ProServer/SourceAdaptor/interpro.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/interpro.pm cp lib/Bio/Das/ProServer/SourceAdaptor/ppid.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/ppid.pm cp lib/Bio/Das/ProServer/SourceAdaptor/gene_pro_db.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/gene_pro_db.pm cp lib/Bio/Das/ProServer/SourceAdaptor/zfish_exons.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/zfish_exons.pm cp lib/Bio/Das/ProServer/SourceAdaptor/snp.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/snp.pm cp lib/Bio/Das/ProServer/SourceAdaptor/simpledb.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/simpledb.pm cp lib/Bio/Das/ProServer/SourceAdaptor/sts.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/sts.pm cp lib/Bio/Das/ProServer/SourceAdaptor/genetrap.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/genetrap.pm cp lib/Bio/Das/ProServer/SourceAdaptor/pdbStructure.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/pdbStructure.pm cp lib/Bio/Das/ProServer/SourceAdaptor/ensgenes.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/ensgenes.pm cp lib/Bio/Das/ProServer/SourceAdaptor/cegg_dbi.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/cegg_dbi.pm cp lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_tilling.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/zfmodels_tilling.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/file.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/ensembl.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/ensembl.pm cp lib/Bio/Das/ProServer/SourceAdaptor/pfamAlign.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/pfamAlign.pm cp lib/Bio/Das/ProServer/SourceAdaptor/CNVDB.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/CNVDB.pm cp lib/Bio/Das/ProServer/SourceAdaptor/pfamSeedAlign.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/pfamSeedAlign.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/bioseqio.pm cp lib/Bio/Das/ProServer/SourceAdaptor/mitocheck_oligos.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/mitocheck_oligos.pm cp lib/Bio/Das/ProServer/SourceAdaptor.pm blib/lib/Bio/Das/ProServer/SourceAdaptor.pm cp lib/Bio/Das/ProServer/SourceAdaptor/styletest.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/styletest.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/generic.pm cp lib/Bio/Das/ProServer/SourceAdaptor/trace.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/trace.pm cp lib/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm cp lib/Bio/Das/ProServer/SourceHydra.pm blib/lib/Bio/Das/ProServer/SourceHydra.pm cp lib/Bio/Das/ProServer/SourceAdaptor/mungeonscore.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/mungeonscore.pm cp lib/Bio/Das/ProServer/SourceAdaptor/simple.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/simple.pm cp lib/Bio/Das/ProServer/SourceAdaptor/agp.pm blib/lib/Bio/Das/ProServer/SourceAdaptor/agp.pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::decipher.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::cosmic.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::jgi_dbi.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::cosmic_genomic.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::indel_Zv4.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::indel_Zv5.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::gensat.3pm Manifying blib/man3/Bio::Das::ProServer::SourceHydra::dbi.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::mirna.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::simplescore_db.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::chori_243.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::swissprot.3pm Manifying blib/man3/Bio::Das::ProServer::Config.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::getz.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::pfam.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::image.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::pfamOtherFeatures.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::zfmodels_array.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::hugo.3pm Manifying blib/man3/Bio::Das::ProServer::SourceHydra::simplescoreh_db.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::zfmodels_insmut.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::hs35_clone.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::ens_ncbi_35_morbid.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::zfmodels_est.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::snp_Zv5.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::cosmic_ncbi_35.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::tilepath.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::pig_ends_all_35.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::pfamFullAlign.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::haplotype.3pm Manifying blib/man3/Bio::Das::ProServer::SourceHydra::ppid.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::getzc.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::csv.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::ensembl_upload.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::upload_euf.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::ens_genexrefs.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::gtfdb.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::snp_Zv4.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::hs34_20_clone.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::zfmodels_morpholino.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::pfetch.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::interpro.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::ppid.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::zfish_exons.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::snp.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::simpledb.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::sts.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::genetrap.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::pdbStructure.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::ensgenes.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::cegg_dbi.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::file.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::ensembl.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::pfamAlign.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::CNVDB.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::pfamSeedAlign.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::mitocheck_oligos.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::dbi.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::generic.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::Transport::oracle.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::trace.3pm Manifying blib/man3/Bio::Das::ProServer::SourceHydra.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::simple.3pm Manifying blib/man3/Bio::Das::ProServer::SourceAdaptor::agp.3pm [ERROR] [Tue Jan 30 13:42:30 2007] MAKE TEST failed: Illegal seek PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/01-pod-u-like............Can't locate Test/Pod/Coverage.pm in @INC (@INC contains: /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/lib /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/arch /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl . /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl .) at t/01-pod-u-like.t line 4. BEGIN failed--compilation aborted at t/01-pod-u-like.t line 4. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/05-config................ok t/10-sourceadaptor-hugo....ok t/10-sourceadaptor.........ok t/11-transport-dbi......... # Failed test 'use Bio::Das::ProServer::SourceAdaptor::Transport::dbi;' # at t/11-transport-dbi.t line 4. # Tried to use 'Bio::Das::ProServer::SourceAdaptor::Transport::dbi'. # Error: Can't locate DBI.pm in @INC (@INC contains: /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/lib /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/arch /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl . /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl .) at /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm line 26. # BEGIN failed--compilation aborted at t/11-transport-dbi.t line 4. # Compilation failed in require at (eval 3) line 2. # BEGIN failed--compilation aborted at (eval 3) line 2. # Failed test 'Bio::Das::ProServer::SourceAdaptor::Transport::dbi->can(...)' # at t/11-transport-dbi.t line 7. # Bio::Das::ProServer::SourceAdaptor::Transport::dbi->can('dbh') failed # Bio::Das::ProServer::SourceAdaptor::Transport::dbi->can('prepare') failed # Bio::Das::ProServer::SourceAdaptor::Transport::dbi->can('disconnect') failed # Bio::Das::ProServer::SourceAdaptor::Transport::dbi->can('DESTROY') failed # Looks like you failed 2 tests of 3. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1, 3 Failed 2/3 tests, 33.33% okay t/11-transport-file........ok t/11-transport-generic.....ok t/11-transport-oracle...... # Failed test 'use Bio::Das::ProServer::SourceAdaptor::Transport::oracle;' # at t/11-transport-oracle.t line 4. # Tried to use 'Bio::Das::ProServer::SourceAdaptor::Transport::oracle'. # Error: Can't locate DBI.pm in @INC (@INC contains: /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/lib /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/arch /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl . /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl .) at /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/dbi.pm line 26. # BEGIN failed--compilation aborted at t/11-transport-oracle.t line 4. # Compilation failed in require at (eval 4) line 3. # ...propagated at /usr/share/perl/5.8/base.pm line 84. # BEGIN failed--compilation aborted at /export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/lib/Bio/Das/ProServer/SourceAdaptor/Transport/oracle.pm line 25. # Compilation failed in require at (eval 3) line 2. # BEGIN failed--compilation aborted at (eval 3) line 2. Can't locate object method "new" via package "Bio::Das::ProServer::SourceAdaptor::Transport::oracle" at t/11-transport-oracle.t line 5. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 1-3 Failed 3/3 tests, 0.00% okay t/15-escaping..............# Looks like you planned 3 tests but only ran 1. # Looks like you failed 1 test of 1 run. # Looks like your test died just after 1. ok t/16-targets...............ok t/25-alignment.............ok Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/01-pod-u-like.t 255 65280 ?? ?? ?? t/11-transport-dbi.t 2 512 3 2 1 3 t/11-transport-oracle.t 255 65280 3 5 1-3 Failed 3/11 test scripts. 5/59 subtests failed. Files=11, Tests=59, 6 wallclock secs ( 2.89 cusr + 1.58 csys = 4.47 CPU) Failed 3/11 test programs. 5/59 subtests failed. MISSING PREREQUISITES: It was observed that the test suite seem to fail without these modules: Test::Pod::Coverage DBI As such, adding the prerequisite module(s) to 'PREREQ_PM' in your Makefile.PL should solve this problem. For example: WriteMakefile( AUTHOR => 'RPETTETT ([EMAIL PROTECTED])', ... # other information PREREQ_PM => { 'Test::Pod::Coverage' => '0', # or a minimum working version 'DBI' => '0', # or a minimum working version } ); If you are interested in making a more flexible Makefile.PL that can probe for missing dependencies and install them, ExtUtils::AutoInstall at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be worth a look. Thanks! :-) PREREQUISITES: Here is a list of prerequisites you specified and versions we managed to load: CGI 3.25 Compress::Zlib 2.003 Config::IniFiles 2.38 Getopt::Long 2.35 HTML::Entities 1.35 HTTP::Request 1.40 HTTP::Response 1.53 POE 0.9917 POE::Filter::HTTPD 1.2155 POE::Wheel::ReadWrite 1.2106 POE::Wheel::SocketFactory 1.2106 POSIX 1.08 Sys::Hostname 1.11 ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: AUTOMATED_TESTING = 1 PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/usr/bin/X11:/usr/games PERL5LIB = :/export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/lib:/export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib/arch:/export/home/chris/.cpanplus/5.8.7/build/Bio-Das-ProServer-2.5/blib PERL5_CPANPLUS_IS_RUNNING = 25983 PERL_MM_USE_DEFAULT = 1 SHELL = /bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /usr/bin/perl UID: $< = 1001 EUID: $> = 1001 GID: $( = 10 104 103 46 44 30 29 26 24 23 21 20 4 10 EGID: $) = 10 104 103 46 44 30 29 26 24 23 21 20 4 10 ------------------------------- -- Summary of my perl5 (revision 5 version 8 subversion 7) configuration: Platform: osname=solaris, osvers=2.11, archname=i386-pc-solaris2.11-thread-multi uname='sunos kernelunix.org 5.11 elatte:os_20050909:2005-09-15 i86pc i386 i86pc solaris ' config_args='-Dusethreads -Duselargefiles -Dccflags=-DDEBIAN -Dcc=gcc -Dldflags=-lm -Dlddlflags=-shared -Dccdlflags=-Wl,-E -Dcccdlflags=-fPIC -Darchname=i386-pc-solaris2.11 -Dprefix=/usr -Dprivlib=/usr/share/perl/5.8 -Darchlib=/usr/lib/perl/5.8 -Dvendorprefix=/usr -Dvendorlib=/usr/share/perl5 -Dvendorarch=/usr/lib/perl5 -Dsiteprefix=/usr/local -Dsitelib=/usr/local/share/perl/5.8.7 -Dsitearch=/usr/local/lib/perl/5.8.7 -Dman1dir=/usr/share/man/man1 -Dman3dir=/usr/share/man/man3 -Dsiteman1dir=/usr/local/man/man1 -Dsiteman3dir=/usr/local/man/man3 -Dman1ext=1 -Dman3ext=3perl -Dpager=/usr/bin/sensible-pager -Uafs -Ud_csh -Uusesfio -Uusenm -Duseshrplib -Dlibperl=libperl.so.5.8.7 -Dd_dosuid -des' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='gcc', ccflags ='-D_REENTRANT -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O', cppflags='-D_REENTRANT -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='4.0.3 20060113 (prerelease) (GNU_Solaris 4.0.2-6nexenta3)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='gcc', ldflags ='-lm -L/usr/local/lib ' libpth=/usr/local/lib /usr/lib /usr/ccs/lib libs=-lm -lgdbm -lgdbm_compat -ldb -ldl -lm -lpthread -lc -lrt -lnsl -lsocket perllibs=-lm -ldl -lm -lpthread -lc -lrt -lnsl -lsocket libc=, so=so, useshrplib=true, libperl=libperl.so.5.8.7 gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E -R /usr/lib/perl/5.8/CORE' cccdlflags='-fPIC', lddlflags='-shared -L/usr/local/lib'
