This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear EASR, This is a computer-generated error report created automatically by CPANPLUS, version 0.076. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Sun Feb 4 12:28:04 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/onto-perl-0.26.tar.gz' [MSG] [Sun Feb 4 12:28:08 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/CHECKSUMS' [MSG] [Sun Feb 4 12:28:08 2007] Checksum matches for 'onto-perl-0.26.tar.gz' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/cco-names.html' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/fake_ulo_cco.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/pre_cco_taxa.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/out_cco.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/.DS_Store' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/goa_assoc.txt' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/names_dummy.dmp' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/nodes_dummy.dmp' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/pre_cco.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test1.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test1.xml' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test2.dot' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test2.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test2.owl' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test2.xml' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test_ulo_cco.dot' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/test_ulo_cco.owl' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/ulo_cco.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/pre_cco_core.obo' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/cco_b.ids' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/data/cco_t.ids' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/GoaAssociationSet.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/Def.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/Relationship.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/RelationshipType.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/TermSet.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/DbxrefSet.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/Term.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/NCBIParser.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/SynonymSet.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/Dbxref.t' [MSG] [Sun Feb 4 12:28:10 2007] Extracted 'onto-perl-latest/t/Ontology.t' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/t/Set.t' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/t/Synonym.t' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/t/OBOParser.t' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/t/GoaAssociation.t' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/t/GoaParser.t' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/Ontology.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/Term.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/Dbxref.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/GoaAssociation.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/Synonym.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/Def.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/Relationship.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Core/RelationshipType.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Parser' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Parser/OBOParser.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Parser/NCBIParser.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Parser/GoaParser.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Util' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Util/DbxrefSet.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Util/SynonymSet.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Util/Set.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Util/GoaAssociationSet.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/CCO/Util/TermSet.pm' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/doc' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/scripts' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/scripts/go2owl.pl' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/scripts/names.xsl' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/scripts/obo2xml.pl' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/scripts/xml2html.xsl' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/scripts/obo2owl.pl' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/onto-perl.pod' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/MANIFEST' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/INSTALL' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/Makefile.PL' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/Changes' [MSG] [Sun Feb 4 12:28:11 2007] Extracted 'onto-perl-latest/README' [MSG] [Sun Feb 4 12:28:12 2007] Extracted 'onto-perl-latest/pm_to_blib' [MSG] [Sun Feb 4 12:28:12 2007] Extracted 'onto-perl-latest/Makefile' [MSG] [Sun Feb 4 12:28:12 2007] Extracted 'onto::perl' to '/home/chris/.cpanplus/5.8.8/build/onto-perl-latest' [MSG] [Sun Feb 4 12:28:15 2007] Writing Makefile for CCO [MSG] [Sun Feb 4 12:28:15 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Sun Feb 4 12:28:19 2007] cp onto-perl.pod blib/lib/onto-perl.pod cp CCO/Core/Dbxref.pm blib/lib/CCO/Core/Dbxref.pm cp CCO/Core/GoaAssociation.pm blib/lib/CCO/Core/GoaAssociation.pm cp CCO/Util/DbxrefSet.pm blib/lib/CCO/Util/DbxrefSet.pm cp CCO/Core/Relationship.pm blib/lib/CCO/Core/Relationship.pm cp CCO/Core/RelationshipType.pm blib/lib/CCO/Core/RelationshipType.pm cp CCO/Util/TermSet.pm blib/lib/CCO/Util/TermSet.pm cp CCO/Util/GoaAssociationSet.pm blib/lib/CCO/Util/GoaAssociationSet.pm cp CCO/Util/SynonymSet.pm blib/lib/CCO/Util/SynonymSet.pm cp CCO/Parser/GoaParser.pm blib/lib/CCO/Parser/GoaParser.pm cp CCO/Core/Ontology.pm blib/lib/CCO/Core/Ontology.pm cp CCO/Core/Synonym.pm blib/lib/CCO/Core/Synonym.pm cp CCO/Core/Def.pm blib/lib/CCO/Core/Def.pm cp CCO/Util/Set.pm blib/lib/CCO/Util/Set.pm cp CCO/Core/Term.pm blib/lib/CCO/Core/Term.pm cp CCO/Parser/NCBIParser.pm blib/lib/CCO/Parser/NCBIParser.pm cp CCO/Parser/OBOParser.pm blib/lib/CCO/Parser/OBOParser.pm Manifying blib/man3/onto-perl.3p Manifying blib/man3/CCO::Core::Dbxref.3p Manifying blib/man3/CCO::Util::DbxrefSet.3p Manifying blib/man3/CCO::Core::GoaAssociation.3p Manifying blib/man3/CCO::Core::Relationship.3p Manifying blib/man3/CCO::Util::TermSet.3p Manifying blib/man3/CCO::Core::RelationshipType.3p Manifying blib/man3/CCO::Util::GoaAssociationSet.3p Manifying blib/man3/CCO::Core::Ontology.3p Manifying blib/man3/CCO::Parser::GoaParser.3p Manifying blib/man3/CCO::Util::SynonymSet.3p Manifying blib/man3/CCO::Core::Def.3p Manifying blib/man3/CCO::Core::Synonym.3p Manifying blib/man3/CCO::Util::Set.3p Manifying blib/man3/CCO::Core::Term.3p Manifying blib/man3/CCO::Parser::NCBIParser.3p Manifying blib/man3/CCO::Parser::OBOParser.3p [ERROR] [Sun Feb 4 12:28:46 2007] MAKE TEST failed: PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Dbxref...............ok t/DbxrefSet............ok t/Def..................ok t/GoaAssociation.......ok t/GoaAssociationSet....ok t/GoaParser............Can't locate CCO_ID_Term_Map.pm in @INC (@INC contains: /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/lib /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/arch /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib /usr/libdata/perl5/i386-openbsd/5.8.8 /usr/local/libdata/perl5/i386-openbsd/5.8.8 /usr/libdata/perl5/i386-openbsd /usr/libdata/perl5 /usr/local/libdata/perl5 /usr/local/libdata/perl5/site_perl/i386-openbsd /usr/libdata/perl5/site_perl/i386-openbsd /usr/local/libdata/perl5/site_perl/i386-openbsd /usr/local/libdata/perl5/site_perl /usr/libdata/perl5/site_perl/i386-openbsd /usr/libdata/perl5/site_perl /usr/local/lib/perl5/site_perl . /usr/libdata/perl5/i386-openbsd/5.8.8 /usr/local/libdata/perl5/i386-openbsd/5.8.8 /usr/libdata/perl5 /usr/local/libdata/perl5 /usr/local/libdata/perl5/site_perl/i386-openbsd /usr/libdata/perl5/site_perl/i386-openbsd /usr/local/libdata/perl5/site_perl /usr/libdata/perl5/site_perl /usr/local/lib/perl5/site_perl . ../cco/scripts/pipeline) at /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/lib/CCO/Parser/GoaParser.pm line 25. BEGIN failed--compilation aborted at /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/lib/CCO/Parser/GoaParser.pm line 25. Compilation failed in require at t/GoaParser.t line 15. BEGIN failed--compilation aborted at t/GoaParser.t line 15. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-5 Failed 5/5 tests, 0.00% okay t/NCBIParser...........Can't locate CCO_ID_Term_Map.pm in @INC (@INC contains: /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/lib /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/arch /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib /usr/libdata/perl5/i386-openbsd/5.8.8 /usr/local/libdata/perl5/i386-openbsd/5.8.8 /usr/libdata/perl5/i386-openbsd /usr/libdata/perl5 /usr/local/libdata/perl5 /usr/local/libdata/perl5/site_perl/i386-openbsd /usr/libdata/perl5/site_perl/i386-openbsd /usr/local/libdata/perl5/site_perl/i386-openbsd /usr/local/libdata/perl5/site_perl /usr/libdata/perl5/site_perl/i386-openbsd /usr/libdata/perl5/site_perl /usr/local/lib/perl5/site_perl . /usr/libdata/perl5/i386-openbsd/5.8.8 /usr/local/libdata/perl5/i386-openbsd/5.8.8 /usr/libdata/perl5 /usr/local/libdata/perl5 /usr/local/libdata/perl5/site_perl/i386-openbsd /usr/libdata/perl5/site_perl/i386-openbsd /usr/local/libdata/perl5/site_perl /usr/libdata/perl5/site_perl /usr/local/lib/perl5/site_perl . ../cco/scripts/pipeline) at /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/lib/CCO/Parser/NCBIParser.pm line 21. BEGIN failed--compilation aborted at /home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/lib/CCO/Parser/NCBIParser.pm line 21. Compilation failed in require at t/NCBIParser.t line 17. BEGIN failed--compilation aborted at t/NCBIParser.t line 17. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-3 Failed 3/3 tests, 0.00% okay t/OBOParser............ok t/Ontology.............ok t/Relationship.........ok t/RelationshipType.....ok t/Set..................ok t/Synonym..............ok t/SynonymSet...........ok t/Term.................ok t/TermSet..............ok Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/GoaParser.t 2 512 5 10 1-5 t/NCBIParser.t 2 512 3 6 1-3 Failed 2/16 test scripts. 8/488 subtests failed. Files=16, Tests=488, 26 wallclock secs (20.54 cusr + 4.00 csys = 24.54 CPU) Failed 2/16 test programs. 8/488 subtests failed. *** Error code 25 Stop in /home/chris/.cpanplus/5.8.8/build/onto-perl-latest (line 863 of Makefile). MISSING PREREQUISITES: It was observed that the test suite seem to fail without these modules: CCO_ID_Term_Map As such, adding the prerequisite module(s) to 'PREREQ_PM' in your Makefile.PL should solve this problem. For example: WriteMakefile( AUTHOR => 'EASR ([EMAIL PROTECTED])', ... # other information PREREQ_PM => { 'CCO_ID_Term_Map' => '0', # or a minimum working version } ); If you are interested in making a more flexible Makefile.PL that can probe for missing dependencies and install them, ExtUtils::AutoInstall at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be worth a look. Thanks! :-) ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: AUTOMATED_TESTING = 1 PATH = /home/chris/bin:/bin:/sbin:/usr/bin:/usr/sbin:/usr/X11R6/bin:/usr/local/bin:/usr/local/sbin:/usr/games:. PERL5LIB = :/home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/lib:/home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib/arch:/home/chris/.cpanplus/5.8.8/build/onto-perl-latest/blib PERL5_CPANPLUS_IS_RUNNING = 8278 PERL_MM_USE_DEFAULT = 1 SHELL = /bin/ksh TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /usr/bin/perl UID: $< = 1000 EUID: $> = 1000 GID: $( = 1000 0 1000 EGID: $) = 1000 0 1000 ------------------------------- -- Summary of my perl5 (revision 5 version 8 subversion 8) configuration: Platform: osname=openbsd, osvers=4.0, archname=i386-openbsd uname='openbsd' config_args='-dsE -Dopenbsd_distribution=defined' hint=recommended, useposix=true, d_sigaction=define usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -fno-delete-null-pointer-checks -pipe -I/usr/local/include', optimize='-O2', cppflags='-fno-strict-aliasing -fno-delete-null-pointer-checks -pipe -I/usr/local/include' ccversion='', gccversion='3.3.5 (propolice)', gccosandvers='openbsd4.0' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags ='-Wl,-E ' libpth=/usr/lib libs=-lm -lutil -lc perllibs=-lm -lutil -lc libc=/usr/lib/libc.a, so=so, useshrplib=true, libperl=libperl.so.10.1 gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-R/usr/libdata/perl5/i386-openbsd/5.8.8/CORE' cccdlflags='-DPIC -fPIC ', lddlflags='-shared -fPIC '
