This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear Markus Riester, This is a computer-generated test report for Bio-Grep-v0.0.1, created automatically by CPAN::Reporter, version 0.40, and sent to the CPAN Testers mailing list. If you have received this email directly, it is because the person testing your distribution chose to send a copy to your CPAN email address; there may be a delay before the official report is received and processed by CPAN Testers. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. Sections of this report: * Tester comments * Prerequisites * Environment and other context * Test output ------------------------------ TESTER COMMENTS ------------------------------ Additional comments from tester: [none provided] ------------------------------ PREREQUISITES ------------------------------ Prerequisite modules loaded: requires: Module Need Have ------------------ ---- ---- Class::MethodMaker 2.02 2.09 Getopt::Long 2.32 2.35 IO::String 1 1.08 Pod::Usage 0 1.33 version 0 0.70 ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: PATH = /usr/bin:/bin:/usr/sbin:/sbin:/usr/X11R6/bin:/usr/local/bin PERL5LIB = PERL5_CPAN_IS_RUNNING = 1 SHELL = /bin/ksh TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = perl-5.8.8/bin/perl UID: $< = 1000 EUID: $> = 1000 GID: $( = 1000 0 1000 EGID: $) = 1000 0 1000 Perl module toolchain versions installed: Module Have ------------------- ------ CPAN 1.8802 Cwd 3.24 ExtUtils::CBuilder n/a ExtUtils::Command 1.09 ExtUtils::Install 1.33 ExtUtils::MakeMaker 6.30 ExtUtils::Manifest 1.46 ExtUtils::ParseXS n/a File::Spec 3.12 Module::Build 0.2806 Module::Signature n/a Test::Harness 2.64 Test::More 0.67 version 0.70 ------------------------------ TEST OUTPUT ------------------------------ Output from '/usr/bin/make test': PERL_DL_NONLAZY=1 /home/david/cpantesting/perl-5.8.8/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/00.load............. # Failed test 'use Bio::Grep;' # at t/00.load.t line 7. # Tried to use 'Bio::Grep'. # Error: Base class package "Bio::Root::Root" is empty. # (Perhaps you need to 'use' the module which defines that package first.) # at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Container/SearchResult.pm line 9 # BEGIN failed--compilation aborted at t/00.load.t line 7. # Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. # BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. # Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. # BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. # Compilation failed in require at (eval 3) line 2. # BEGIN failed--compilation aborted at (eval 3) line 2. # Failed test 'use Bio::Grep::Root;' # at t/00.load.t line 8. # Tried to use 'Bio::Grep::Root'. # Error: Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl .) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Root.pm line 6. # BEGIN failed--compilation aborted at t/00.load.t line 8. # Compilation failed in require at (eval 5) line 2. # BEGIN failed--compilation aborted at (eval 5) line 2. # Failed test 'use Bio::Grep::Backends::Agrep;' # at t/00.load.t line 9. # Tried to use 'Bio::Grep::Backends::Agrep'. # Error: Can't locate Bio/Seq.pm in @INC (@INC contains: t /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl .) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/BackendI.pm line 10. # BEGIN failed--compilation aborted at t/00.load.t line 9. # Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Agrep.pm line 8. # BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Agrep.pm line 8. # Compilation failed in require at (eval 6) line 2. # BEGIN failed--compilation aborted at (eval 6) line 2. # Failed test 'use Bio::Grep::Backends::GUUGle;' # at t/00.load.t line 11. # Tried to use 'Bio::Grep::Backends::GUUGle'. # Error: Can't locate Bio/Align/AlignI.pm in @INC (@INC contains: t /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl .) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/GUUGle.pm line 9. # BEGIN failed--compilation aborted at t/00.load.t line 11. # Compilation failed in require at (eval 8) line 2. # BEGIN failed--compilation aborted at (eval 8) line 2. # Failed test 'use Bio::Grep::Backends::Hypa;' # at t/00.load.t line 12. # Tried to use 'Bio::Grep::Backends::Hypa'. # Error: Can't locate Bio/Seq.pm in @INC (@INC contains: t /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/OpenBSD.i386-openbsd /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl .) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Hypa.pm line 12. # BEGIN failed--compilation aborted at t/00.load.t line 12. # Compilation failed in require at (eval 9) line 2. # BEGIN failed--compilation aborted at (eval 9) line 2. # Failed test 'use Bio::Grep::Filter::FilterI;' # at t/00.load.t line 16. # Tried to use 'Bio::Grep::Filter::FilterI'. # Error: Base class package "Bio::Root::Root" is empty. # (Perhaps you need to 'use' the module which defines that package first.) # at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Filter/FilterI.pm line 8 # BEGIN failed--compilation aborted at t/00.load.t line 16. # Compilation failed in require at (eval 14) line 2. # BEGIN failed--compilation aborted at (eval 14) line 2. Use of uninitialized value in concatenation (.) or string at t/00.load.t line 21. # Testing Bio::Grep # Looks like you failed 6 tests of 12. dubious Test returned status 6 (wstat 1536, 0x600) DIED. FAILED tests 1-3, 5-6, 10 Failed 6/12 tests, 50.00% okay t/10.Backends.........Base class package "Bio::Root::Root" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Container/SearchResult.pm line 9 BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Container/SearchResult.pm line 9. Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. Compilation failed in require at t/10.Backends.t line 32. BEGIN failed--compilation aborted at t/10.Backends.t line 32. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/11.BackendGUUGle....Base class package "Bio::Root::Root" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Container/SearchResult.pm line 9 BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Container/SearchResult.pm line 9. Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. Compilation failed in require at t/11.BackendGUUGle.t line 27. BEGIN failed--compilation aborted at t/11.BackendGUUGle.t line 27. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/20.Filter...........Base class package "Bio::Root::Root" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Filter/FilterI.pm line 8 BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Filter/FilterI.pm line 8. Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Filter/FilterRemoveDuplicates.pm line 6. BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Filter/FilterRemoveDuplicates.pm line 6. Compilation failed in require at t/20.Filter.t line 22. BEGIN failed--compilation aborted at t/20.Filter.t line 22. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/30.Utils............Base class package "Bio::Root::Root" is empty. (Perhaps you need to 'use' the module which defines that package first.) at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Container/SearchResult.pm line 9 BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Container/SearchResult.pm line 9. Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep/Backends/Vmatch.pm line 7. Compilation failed in require at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. BEGIN failed--compilation aborted at /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf/blib/lib/Bio/Grep.pm line 6. Compilation failed in require at t/30.Utils.t line 17. BEGIN failed--compilation aborted at t/30.Utils.t line 17. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 1-31 Failed 31/31 tests, 0.00% okay t/40.synopsis.........skipped all skipped: Vmatch binary not in path t/pod-coverage........ok t/pod.................ok Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/00.load.t 6 1536 12 6 1-3 5-6 10 t/10.Backends.t 255 65280 ?? ?? ?? t/11.BackendGUUGle.t 255 65280 ?? ?? ?? t/20.Filter.t 255 65280 ?? ?? ?? t/30.Utils.t 255 65280 31 62 1-31 1 test skipped. Failed 5/8 test scripts. 37/66 subtests failed. Files=8, Tests=66, 2 wallclock secs ( 0.53 cusr + 0.92 csys = 1.45 CPU) Failed 5/8 test programs. 37/66 subtests failed. *** Error code 25 Stop in /home/david/cpantesting/perl-5.8.8/.cpan/build/Bio-Grep-v0.0.1-Pfgamf (line 844 of Makefile). -- Summary of my perl5 (revision 5 version 8 subversion 8) configuration: Platform: osname=openbsd, osvers=3.5, archname=OpenBSD.i386-openbsd uname='openbsd tractor.barnyard.co.uk 3.5 generic#34 i386 ' config_args='-Dprefix=/home/david/cpantesting/perl-5.8.8 -de' hint=recommended, useposix=true, d_sigaction=define usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include', optimize='-O2', cppflags='-fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='2.95.3 20010125 (prerelease, propolice)', gccosandvers='openbsd3.5' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags ='-Wl,-E -L/usr/local/lib' libpth=/usr/local/lib /usr/lib libs=-lgdbm -lm -lutil -lc perllibs=-lm -lutil -lc libc=/usr/lib/libc.so.30.3, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' ' cccdlflags='-DPIC -fPIC ', lddlflags='-shared -fPIC -L/usr/local/lib'
