This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear EASR, This is a computer-generated error report created automatically by CPANPLUS, version 0.076. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Thu Mar 29 09:53:12 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/onto-perl-0.30.tar.gz' [MSG] [Thu Mar 29 09:53:14 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/CHECKSUMS' [MSG] [Thu Mar 29 09:53:15 2007] Checksum matches for 'onto-perl-0.30.tar.gz' [MSG] [Thu Mar 29 09:53:16 2007] Extracted 'onto-perl-0.30/' [MSG] [Thu Mar 29 09:53:16 2007] Extracted 'onto-perl-0.30/t/' [MSG] [Thu Mar 29 09:53:16 2007] Extracted 'onto-perl-0.30/t/data/' [MSG] [Thu Mar 29 09:53:16 2007] Extracted 'onto-perl-0.30/t/data/ulo_cco.obo' [MSG] [Thu Mar 29 09:53:16 2007] Extracted 'onto-perl-0.30/t/data/pre_cco.obo' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/nodes_dummy.dmp' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/cco_i_At.ids' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/out_I_A_thaliana.obo' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/goa_assoc.txt' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/cco_b.ids' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/goa_assoc_filt.txt' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/arath_small-05.xml' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/names_dummy.dmp' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/cco_b_tair.ids' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/pre_cco_core.obo' [MSG] [Thu Mar 29 09:53:17 2007] Extracted 'onto-perl-0.30/t/data/up_test.txt' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/data/cco_t.ids' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/data/fake_ulo_cco.obo' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/data/out_cco_up.obo' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/data/out_cco.obo' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/data/header.obo' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/data/cco_i.ids' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/SynonymSet.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/GoaAssociation.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/OBOParser.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/InteractionManager.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/Ontology.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/NCBIParser.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/TermSet.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/GoaAssociationSet.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/Def.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/RelationshipType.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/Synonym.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/Set.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/GoaParser.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/Dbxref.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/DbxrefSet.t' [MSG] [Thu Mar 29 09:53:18 2007] Extracted 'onto-perl-0.30/t/Term.t' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/t/Relationship.t' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/DbxrefSet.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/ObjectIdSet.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/Set.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/XMLIntactParser.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/CCO_ID_Set.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/CCO_ID_Term_Map.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/CCO_ID.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/SynonymSet.pm' [MSG] [Thu Mar 29 09:53:19 2007] Extracted 'onto-perl-0.30/CCO/Util/TermSet.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Util/GoaAssociationSet.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Util/ObjectSet.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/GoaAssociation.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Synonym.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Def.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Interaction.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Relationship.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Term.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Dbxref.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/IDspace.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/RelationshipType.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Ontology.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Core/Interactor.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Parser/' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Parser/UniProtParser.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Parser/NCBIParser.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Parser/InteractionManager.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Parser/OBOParser.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/CCO/Parser/GoaParser.pm' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/Changes' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/MANIFEST' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/scripts/' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/scripts/names.xsl' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/scripts/obo2cco.pl' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/scripts/xml2html.xsl' [MSG] [Thu Mar 29 09:53:20 2007] Extracted 'onto-perl-0.30/scripts/obo2xml.pl' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/scripts/obo2owl.pl' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/scripts/go2owl.pl' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/LICENSE' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/README' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/META.yml' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/onto-perl.pod' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/INSTALL' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto-perl-0.30/Makefile.PL' [MSG] [Thu Mar 29 09:53:21 2007] Extracted 'onto::perl' to '/export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30' [MSG] [Thu Mar 29 09:53:24 2007] Checking if your kit is complete... Looks good Warning: prerequisite SWISS::Entry 1.65 not found. Writing Makefile for CCO [MSG] [Thu Mar 29 09:53:24 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [ERROR] [Thu Mar 29 09:53:24 2007] No such module 'SWISS::Entry' found on CPAN [MSG] [Thu Mar 29 09:53:36 2007] cp CCO/Util/DbxrefSet.pm blib/lib/CCO/Util/DbxrefSet.pm cp CCO/Core/GoaAssociation.pm blib/lib/CCO/Core/GoaAssociation.pm cp CCO/Parser/UniProtParser.pm blib/lib/CCO/Parser/UniProtParser.pm cp CCO/Util/TermSet.pm blib/lib/CCO/Util/TermSet.pm cp CCO/Util/GoaAssociationSet.pm blib/lib/CCO/Util/GoaAssociationSet.pm cp CCO/Util/CCO_ID_Set.pm blib/lib/CCO/Util/CCO_ID_Set.pm cp CCO/Core/Synonym.pm blib/lib/CCO/Core/Synonym.pm cp CCO/Parser/InteractionManager.pm blib/lib/CCO/Parser/InteractionManager.pm cp CCO/Core/Def.pm blib/lib/CCO/Core/Def.pm cp CCO/Util/ObjectIdSet.pm blib/lib/CCO/Util/ObjectIdSet.pm cp CCO/Util/CCO_ID_Term_Map.pm blib/lib/CCO/Util/CCO_ID_Term_Map.pm cp CCO/Core/Term.pm blib/lib/CCO/Core/Term.pm cp CCO/Parser/NCBIParser.pm blib/lib/CCO/Parser/NCBIParser.pm cp onto-perl.pod blib/lib/onto-perl.pod cp CCO/Core/Dbxref.pm blib/lib/CCO/Core/Dbxref.pm cp CCO/Util/CCO_ID.pm blib/lib/CCO/Util/CCO_ID.pm cp CCO/Core/Interaction.pm blib/lib/CCO/Core/Interaction.pm cp CCO/Core/IDspace.pm blib/lib/CCO/Core/IDspace.pm cp CCO/Core/Relationship.pm blib/lib/CCO/Core/Relationship.pm cp CCO/Core/RelationshipType.pm blib/lib/CCO/Core/RelationshipType.pm cp CCO/Util/ObjectSet.pm blib/lib/CCO/Util/ObjectSet.pm cp CCO/Util/SynonymSet.pm blib/lib/CCO/Util/SynonymSet.pm cp CCO/Core/Ontology.pm blib/lib/CCO/Core/Ontology.pm cp CCO/Parser/GoaParser.pm blib/lib/CCO/Parser/GoaParser.pm cp CCO/Util/Set.pm blib/lib/CCO/Util/Set.pm cp CCO/Util/XMLIntactParser.pm blib/lib/CCO/Util/XMLIntactParser.pm cp CCO/Core/Interactor.pm blib/lib/CCO/Core/Interactor.pm cp CCO/Parser/OBOParser.pm blib/lib/CCO/Parser/OBOParser.pm Manifying blib/man3/CCO::Core::GoaAssociation.3pm Manifying blib/man3/CCO::Util::DbxrefSet.3pm Manifying blib/man3/CCO::Parser::UniProtParser.3pm Manifying blib/man3/CCO::Util::TermSet.3pm Manifying blib/man3/CCO::Util::GoaAssociationSet.3pm Manifying blib/man3/CCO::Util::CCO_ID_Set.3pm Manifying blib/man3/CCO::Core::Def.3pm Manifying blib/man3/CCO::Core::Synonym.3pm Manifying blib/man3/CCO::Parser::InteractionManager.3pm Manifying blib/man3/CCO::Util::ObjectIdSet.3pm Manifying blib/man3/CCO::Core::Term.3pm Manifying blib/man3/CCO::Util::CCO_ID_Term_Map.3pm Manifying blib/man3/CCO::Parser::NCBIParser.3pm Manifying blib/man3/onto-perl.3pm Manifying blib/man3/CCO::Core::Dbxref.3pm Manifying blib/man3/CCO::Util::CCO_ID.3pm Manifying blib/man3/CCO::Core::IDspace.3pm Manifying blib/man3/CCO::Core::Relationship.3pm Manifying blib/man3/CCO::Core::RelationshipType.3pm Manifying blib/man3/CCO::Util::ObjectSet.3pm Manifying blib/man3/CCO::Parser::GoaParser.3pm Manifying blib/man3/CCO::Core::Ontology.3pm Manifying blib/man3/CCO::Util::SynonymSet.3pm Manifying blib/man3/CCO::Util::Set.3pm Manifying blib/man3/CCO::Parser::OBOParser.3pm [ERROR] [Thu Mar 29 09:54:09 2007] MAKE TEST failed: Illegal seek PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Dbxref................ok t/DbxrefSet.............ok t/Def...................ok t/GoaAssociation........ok t/GoaAssociationSet.....ok t/GoaParser.............ok t/InteractionManager....Can't locate XML/Simple.pm in @INC (@INC contains: /export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib/lib /export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib/arch /export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl . /etc/perl /usr/local/lib/perl/5.8.7 /usr/local/share/perl/5.8.7 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/perl/5.8 /usr/local/lib/site_perl .) at /export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib/lib/CCO/Util/XMLIntactParser.pm line 12. BEGIN failed--compilation aborted at /export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib/lib/CCO/Util/XMLIntactParser.pm line 12. Compilation failed in require at t/InteractionManager.t line 18. BEGIN failed--compilation aborted at t/InteractionManager.t line 18. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-7 Failed 7/7 tests, 0.00% okay t/NCBIParser............ok t/OBOParser.............ok t/Ontology..............ok t/Relationship..........ok t/RelationshipType......ok t/Set...................ok t/Synonym...............ok t/SynonymSet............ok t/Term..................ok t/TermSet...............ok Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/InteractionManager.t 2 512 7 14 1-7 Failed 1/17 test scripts. 7/514 subtests failed. Files=17, Tests=514, 31 wallclock secs (13.02 cusr + 1.55 csys = 14.57 CPU) Failed 1/17 test programs. 7/514 subtests failed. MISSING PREREQUISITES: It was observed that the test suite seem to fail without these modules: XML::Simple As such, adding the prerequisite module(s) to 'PREREQ_PM' in your Makefile.PL should solve this problem. For example: WriteMakefile( AUTHOR => 'EASR ([EMAIL PROTECTED])', ... # other information PREREQ_PM => { 'XML::Simple' => '0', # or a minimum working version } ); If you are interested in making a more flexible Makefile.PL that can probe for missing dependencies and install them, ExtUtils::AutoInstall at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be worth a look. Thanks! :-) PREREQUISITES: Here is a list of prerequisites you specified and versions we managed to load: ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: AUTOMATED_TESTING = 1 PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/usr/bin/X11:/usr/games PERL5LIB = :/export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib/lib:/export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib/arch:/export/home/chris/.cpanplus/5.8.7/build/onto-perl-0.30/blib PERL5_CPANPLUS_IS_RUNNING = 15533 PERL_MM_USE_DEFAULT = 1 SHELL = /bin/bash TERM = sun-color Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /usr/bin/perl UID: $< = 1001 EUID: $> = 1001 GID: $( = 10 104 103 46 44 30 29 26 24 23 21 20 4 10 EGID: $) = 10 104 103 46 44 30 29 26 24 23 21 20 4 10 ------------------------------- -- Summary of my perl5 (revision 5 version 8 subversion 7) configuration: Platform: osname=solaris, osvers=2.11, archname=i386-pc-solaris2.11-thread-multi uname='sunos kernelunix.org 5.11 elatte:os_20050909:2005-09-15 i86pc i386 i86pc solaris ' config_args='-Dusethreads -Duselargefiles -Dccflags=-DDEBIAN -Dcc=gcc -Dldflags=-lm -Dlddlflags=-shared -Dccdlflags=-Wl,-E -Dcccdlflags=-fPIC -Darchname=i386-pc-solaris2.11 -Dprefix=/usr -Dprivlib=/usr/share/perl/5.8 -Darchlib=/usr/lib/perl/5.8 -Dvendorprefix=/usr -Dvendorlib=/usr/share/perl5 -Dvendorarch=/usr/lib/perl5 -Dsiteprefix=/usr/local -Dsitelib=/usr/local/share/perl/5.8.7 -Dsitearch=/usr/local/lib/perl/5.8.7 -Dman1dir=/usr/share/man/man1 -Dman3dir=/usr/share/man/man3 -Dsiteman1dir=/usr/local/man/man1 -Dsiteman3dir=/usr/local/man/man3 -Dman1ext=1 -Dman3ext=3perl -Dpager=/usr/bin/sensible-pager -Uafs -Ud_csh -Uusesfio -Uusenm -Duseshrplib -Dlibperl=libperl.so.5.8.7 -Dd_dosuid -des' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='gcc', ccflags ='-D_REENTRANT -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O', cppflags='-D_REENTRANT -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='4.0.3 20060113 (prerelease) (GNU_Solaris 4.0.2-6nexenta3)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='gcc', ldflags ='-lm -L/usr/local/lib ' libpth=/usr/local/lib /usr/lib /usr/ccs/lib libs=-lm -lgdbm -lgdbm_compat -ldb -ldl -lm -lpthread -lc -lrt -lnsl -lsocket perllibs=-lm -ldl -lm -lpthread -lc -lrt -lnsl -lsocket libc=, so=so, useshrplib=true, libperl=libperl.so.5.8.7 gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E -R /usr/lib/perl/5.8/CORE' cccdlflags='-fPIC', lddlflags='-shared -L/usr/local/lib'
