This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear RVOSA, This is a computer-generated error report created automatically by CPANPLUS, version 0.076. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Fri Mar 30 08:17:47 2007] Trying to get 'http://www.cpan.org/authors/id/R/RV/RVOSA/Bio-Phylo-0.16_RC1.tar.gz' [MSG] [Fri Mar 30 08:17:49 2007] Trying to get 'http://www.cpan.org/authors/id/R/RV/RVOSA/CHECKSUMS' [MSG] [Fri Mar 30 08:17:49 2007] Checksum matches for 'Bio-Phylo-0.16_RC1.tar.gz' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin/age2bl.pl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin/bremer.pl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin/dnd2svg.pl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin/dndtag.pl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin/droptip.pl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin/LRmb.pl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/bin/postmb.pl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/Build.PL' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/Changes' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/ObjectCompat.pod' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Adaptor' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Adaptor/Bioperl' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Adaptor/Bioperl/Datum.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Adaptor/Bioperl/Matrix.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Adaptor/Bioperl/Node.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Adaptor/Bioperl/Tree.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/._Adaptor.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Adaptor.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Forest' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Forest/Node.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Forest/Tree.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Forest.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Generator.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/IO.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Listable.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Manual.pod' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Continuous.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Custom.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Dna.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Mixed.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Protein.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Restriction.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Rna.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype/Standard.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/._Datatype.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datatype.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Datum.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/Matrix.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/._TypeSafeData.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices/TypeSafeData.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Matrices.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Mediators' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Mediators/TaxaMediator.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Parsers' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Parsers/Newick.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Parsers/Nexus.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Parsers/Table.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Parsers/Taxlist.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Taxa' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Taxa/._TaxaLinker.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Taxa/TaxaLinker.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Taxa/Taxon.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Taxa/._TaxonLinker.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Taxa/TaxonLinker.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Taxa.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Treedrawer' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Treedrawer/Svg.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Treedrawer.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Unparsers' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Unparsers/Mrp.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Unparsers/Newick.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Unparsers/Nexus.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Unparsers/Pagel.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Util' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Util/CONSTANT.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Util/Exceptions.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Util/IDPool.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Util/._XMLWritable.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo/Util/XMLWritable.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/lib/Bio/Phylo.pm' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/Makefile.PL' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/MANIFEST' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/META.yml' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/README' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/t' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/t/00-load.t' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/t/01-phylo.t' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/t/02-newick.t' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/t/03-node.t' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/t/04-generator.t' [MSG] [Fri Mar 30 08:17:50 2007] Extracted 'Bio-Phylo-0.16_RC1/t/05-trees.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/06-tree.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/07-unparse.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/08-datum.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/09-matrix.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/10-matrices.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/11-taxon.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/12-taxa.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/13-listable.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/14-nexus.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/15-table.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/16-unparse.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/17-parse.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/18-taxlist.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/19-svg.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/pod-coverage.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/pod.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/regress_18208.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/._regress_21209.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/regress_21209.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/regress_21417.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/._regress_22813.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio-Phylo-0.16_RC1/t/regress_22813.t' [MSG] [Fri Mar 30 08:17:51 2007] Extracted 'Bio::Phylo' to '/home/chris/.cpanplus/5.8.8/build/Bio-Phylo-0.16_RC1' [MSG] [Fri Mar 30 08:17:52 2007] Checking if your kit is complete... Looks good Warning: prerequisite IO::String 1.05 not found. Warning: prerequisite Math::Random 0.67 not found. Warning: prerequisite SVG 1.07 not found. Writing Makefile for Bio::Phylo [MSG] [Fri Mar 30 08:17:52 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Fri Mar 30 08:17:52 2007] Module 'Bio::Phylo' requires 'IO::String' version '1.05' to be installed [MSG] [Fri Mar 30 08:17:52 2007] Module 'Bio::Phylo' requires 'Math::Random' version '0.67' to be installed [MSG] [Fri Mar 30 08:17:52 2007] Module 'Bio::Phylo' requires 'SVG' version '1.07' to be installed [MSG] [Fri Mar 30 08:17:52 2007] Trying to get 'http://www.cpan.org/authors/id/G/GA/GAAS/CHECKSUMS' [MSG] [Fri Mar 30 08:17:53 2007] Checksum matches for 'IO-String-1.08.tar.gz' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/META.yml' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/t' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/t/truncate.t' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/t/read.t' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/t/close.t' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/t/write.t' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/t/para.t' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/t/seek.t' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/String.pm' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/Changes' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/MANIFEST' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/Makefile.PL' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO-String-1.08/README' [MSG] [Fri Mar 30 08:17:53 2007] Extracted 'IO::String' to '/home/chris/.cpanplus/5.8.8/build/IO-String-1.08' [MSG] [Fri Mar 30 08:17:53 2007] 'Makefile' already exists, not running '/home/chris/dev/perl588/bin/perl Makefile.PL' again unless you force [MSG] [Fri Mar 30 08:17:53 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Fri Mar 30 08:17:53 2007] Already ran '/usr/pkg/bin/gmake' for this module [IO::String] -- not running again unless you force [MSG] [Fri Mar 30 08:17:54 2007] MAKE TEST passed: PERL_DL_NONLAZY=1 /home/chris/dev/perl588/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/close.......ok t/para........ok t/read........ok t/seek........ok t/truncate....ok t/write.......ok All tests successful. Files=6, Tests=43, 1 wallclock secs ( 0.27 cusr + 0.10 csys = 0.37 CPU) [MSG] [Fri Mar 30 08:17:54 2007] Ok, not sending test report [MSG] [Fri Mar 30 08:17:54 2007] Trying to get 'http://www.cpan.org/authors/id/G/GR/GROMMEL/CHECKSUMS' [MSG] [Fri Mar 30 08:17:55 2007] Checksum matches for 'Math-Random-0.69.tar.gz' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/helper.h' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/README' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/linpack.c' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/Index' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/MANIFEST' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/randlib.c' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/randlib.h' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/Changes' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/Makefile.PL' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/test1.pl' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/Random.xs' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/test2.pl' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/example.pl' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/Random.pm' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/INSTALL' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/helper.c' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math-Random-0.69/com.c' [MSG] [Fri Mar 30 08:17:55 2007] Extracted 'Math::Random' to '/home/chris/.cpanplus/5.8.8/build/Math-Random-0.69' [MSG] [Fri Mar 30 08:17:56 2007] Checking if your kit is complete... Looks good Writing Makefile for Math::Random [MSG] [Fri Mar 30 08:17:56 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Fri Mar 30 08:18:05 2007] cp test2.pl blib/lib/Math/test2.pl cp test1.pl blib/lib/Math/test1.pl cp Random.pm blib/lib/Math/Random.pm AutoSplitting blib/lib/Math/Random.pm (blib/lib/auto/Math/Random) cp example.pl blib/lib/Math/example.pl /home/chris/dev/perl588/bin/perl /home/chris/dev/perl588/lib/5.8.8/ExtUtils/xsubpp -typemap /home/chris/dev/perl588/lib/5.8.8/ExtUtils/typemap Random.xs > Random.xsc && mv Random.xsc Random.c cc -c -fno-strict-aliasing -pipe -I/usr/pkg/include -O -DVERSION=\"0.69\" -DXS_VERSION=\"0.69\" -DPIC -fPIC "-I/home/chris/dev/perl588/lib/5.8.8/i386-netbsd-thread-multi-64int/CORE" Random.c cc -c -fno-strict-aliasing -pipe -I/usr/pkg/include -O -DVERSION=\"0.69\" -DXS_VERSION=\"0.69\" -DPIC -fPIC "-I/home/chris/dev/perl588/lib/5.8.8/i386-netbsd-thread-multi-64int/CORE" com.c cc -c -fno-strict-aliasing -pipe -I/usr/pkg/include -O -DVERSION=\"0.69\" -DXS_VERSION=\"0.69\" -DPIC -fPIC "-I/home/chris/dev/perl588/lib/5.8.8/i386-netbsd-thread-multi-64int/CORE" helper.c cc -c -fno-strict-aliasing -pipe -I/usr/pkg/include -O -DVERSION=\"0.69\" -DXS_VERSION=\"0.69\" -DPIC -fPIC "-I/home/chris/dev/perl588/lib/5.8.8/i386-netbsd-thread-multi-64int/CORE" linpack.c cc -c -fno-strict-aliasing -pipe -I/usr/pkg/include -O -DVERSION=\"0.69\" -DXS_VERSION=\"0.69\" -DPIC -fPIC "-I/home/chris/dev/perl588/lib/5.8.8/i386-netbsd-thread-multi-64int/CORE" randlib.c Running Mkbootstrap for Math::Random () chmod 644 Random.bs rm -f blib/arch/auto/Math/Random/Random.so cc --whole-archive -shared -L/usr/pkg/lib Random.o com.o helper.o linpack.o randlib.o -o blib/arch/auto/Math/Random/Random.so \ -lm \ chmod 755 blib/arch/auto/Math/Random/Random.so cp Random.bs blib/arch/auto/Math/Random/Random.bs chmod 644 blib/arch/auto/Math/Random/Random.bs Manifying blib/man3/Math::Random.3 [MSG] [Fri Mar 30 08:18:05 2007] MAKE TEST passed: PERL_DL_NONLAZY=1 /home/chris/dev/perl588/bin/perl "-Iblib/lib" "-Iblib/arch" test.pl 1..16 ok 1 random_uniform..................ok 2 random_uniform_integer..........ok 3 random_permutation..............ok 4 random_permuted_index...........ok 5 random_normal...................ok 6 random_chi_square...............ok 7 random_f........................ok 8 random_beta.....................ok 9 random_binomial.................ok 10 random_poisson..................ok 11 random_exponential..............ok 12 random_gamma....................ok 13 random_multinomial..............ok 14 random_negative_binomial........ok 15 random_multivariate_normal......ok 16 All tests successful. [MSG] [Fri Mar 30 08:18:05 2007] Ok, not sending test report [MSG] [Fri Mar 30 08:18:05 2007] Trying to get 'http://www.cpan.org/authors/id/R/RO/RONAN/CHECKSUMS' [MSG] [Fri Mar 30 08:18:06 2007] Checksum matches for 'SVG-2.33.tar.gz' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib/SVG' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib/SVG/DOM.pm' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib/SVG/Extension.pm' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib/SVG/XML.pm' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib/SVG/Manual.pm' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib/SVG/Element.pm' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/lib/SVG.pm' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/test' [MSG] [Fri Mar 30 08:18:06 2007] Extracted 'SVG-2.33/test/14-attributes.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/03-render.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/01-loadsvg.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/21-polygon.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/12-elementid.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/20-anchor.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/02-simpledoc.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/18-filter.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/06-doctype.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/13-duplicateids.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/11-customtags.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/22-xlink.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/10-autoload.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/16-siblings.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/05-processinginstruction.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/17-tagtypes.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/09-script.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/07-extension.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/15-parentage.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/04-inline.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/08-looknfeel.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test/19-style.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/README' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/Changes' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/test.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/Makefile.PL' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/META.yml' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/attributeManip.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/sun_text_sample.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/inlinesvg.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/starpath.cgi' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/svgtest2.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/SVG_02_sample.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/minsvg.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/image_sample.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/svg_dom_sample.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/svg.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/yaph5.cgi' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/examples/inline_sample.pl' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG-2.33/MANIFEST' [MSG] [Fri Mar 30 08:18:07 2007] Extracted 'SVG' to '/home/chris/.cpanplus/5.8.8/build/SVG-2.33' [MSG] [Fri Mar 30 08:18:08 2007] Checking if your kit is complete... Looks good Writing Makefile for SVG [MSG] [Fri Mar 30 08:18:08 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Fri Mar 30 08:18:10 2007] cp lib/SVG/Element.pm blib/lib/SVG/Element.pm cp lib/SVG/Manual.pm blib/lib/SVG/Manual.pm cp lib/SVG/Extension.pm blib/lib/SVG/Extension.pm cp lib/SVG/DOM.pm blib/lib/SVG/DOM.pm cp lib/SVG.pm blib/lib/SVG.pm cp lib/SVG/XML.pm blib/lib/SVG/XML.pm Manifying blib/man3/SVG::Element.3 Manifying blib/man3/SVG::Manual.3 Manifying blib/man3/SVG::DOM.3 Manifying blib/man3/SVG::Extension.3 Manifying blib/man3/SVG::XML.3 Manifying blib/man3/SVG.3 [MSG] [Fri Mar 30 08:18:13 2007] MAKE TEST passed: PERL_DL_NONLAZY=1 /home/chris/dev/perl588/bin/perl "-Iblib/lib" "-Iblib/arch" test.pl 1..22 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 [MSG] [Fri Mar 30 08:18:13 2007] Ok, not sending test report [MSG] [Fri Mar 30 08:18:21 2007] cp lib/Bio/Phylo/Forest.pm blib/lib/Bio/Phylo/Forest.pm cp lib/Bio/Phylo/Parsers/Nexus.pm blib/lib/Bio/Phylo/Parsers/Nexus.pm cp lib/Bio/Phylo/Taxa/._TaxonLinker.pm blib/lib/Bio/Phylo/Taxa/._TaxonLinker.pm cp lib/Bio/Phylo/Matrices.pm blib/lib/Bio/Phylo/Matrices.pm cp lib/Bio/Phylo/Matrices/TypeSafeData.pm blib/lib/Bio/Phylo/Matrices/TypeSafeData.pm cp lib/Bio/Phylo/Forest/Node.pm blib/lib/Bio/Phylo/Forest/Node.pm cp lib/Bio/Phylo/Adaptor.pm blib/lib/Bio/Phylo/Adaptor.pm cp lib/Bio/Phylo/Util/IDPool.pm blib/lib/Bio/Phylo/Util/IDPool.pm cp lib/Bio/Phylo/Taxa/Taxon.pm blib/lib/Bio/Phylo/Taxa/Taxon.pm cp lib/Bio/Phylo/Taxa.pm blib/lib/Bio/Phylo/Taxa.pm cp lib/Bio/Phylo/Unparsers/Mrp.pm blib/lib/Bio/Phylo/Unparsers/Mrp.pm cp lib/Bio/Phylo/Matrices/Datatype/Protein.pm blib/lib/Bio/Phylo/Matrices/Datatype/Protein.pm cp lib/Bio/Phylo/Manual.pod blib/lib/Bio/Phylo/Manual.pod cp lib/Bio/Phylo/IO.pm blib/lib/Bio/Phylo/IO.pm cp lib/Bio/Phylo/Matrices/._TypeSafeData.pm blib/lib/Bio/Phylo/Matrices/._TypeSafeData.pm cp lib/Bio/Phylo/Parsers/Newick.pm blib/lib/Bio/Phylo/Parsers/Newick.pm cp lib/Bio/Phylo/Matrices/Datatype/Standard.pm blib/lib/Bio/Phylo/Matrices/Datatype/Standard.pm cp lib/Bio/Phylo/Util/Exceptions.pm blib/lib/Bio/Phylo/Util/Exceptions.pm cp lib/Bio/Phylo/Util/CONSTANT.pm blib/lib/Bio/Phylo/Util/CONSTANT.pm cp lib/Bio/Phylo/Matrices/._Datatype.pm blib/lib/Bio/Phylo/Matrices/._Datatype.pm cp lib/Bio/Phylo/Matrices/Matrix.pm blib/lib/Bio/Phylo/Matrices/Matrix.pm cp lib/Bio/Phylo/Matrices/Datatype/Restriction.pm blib/lib/Bio/Phylo/Matrices/Datatype/Restriction.pm cp lib/Bio/Phylo/Parsers/Table.pm blib/lib/Bio/Phylo/Parsers/Table.pm cp lib/Bio/Phylo/Taxa/TaxaLinker.pm blib/lib/Bio/Phylo/Taxa/TaxaLinker.pm cp lib/Bio/Phylo/Adaptor/Bioperl/Node.pm blib/lib/Bio/Phylo/Adaptor/Bioperl/Node.pm cp lib/Bio/Phylo/Listable.pm blib/lib/Bio/Phylo/Listable.pm cp lib/Bio/Phylo/Util/XMLWritable.pm blib/lib/Bio/Phylo/Util/XMLWritable.pm cp lib/Bio/Phylo/Parsers/Taxlist.pm blib/lib/Bio/Phylo/Parsers/Taxlist.pm cp lib/Bio/Phylo/Taxa/._TaxaLinker.pm blib/lib/Bio/Phylo/Taxa/._TaxaLinker.pm cp lib/Bio/Phylo/Util/._XMLWritable.pm blib/lib/Bio/Phylo/Util/._XMLWritable.pm cp lib/Bio/Phylo/Adaptor/Bioperl/Datum.pm blib/lib/Bio/Phylo/Adaptor/Bioperl/Datum.pm cp lib/Bio/Phylo/Generator.pm blib/lib/Bio/Phylo/Generator.pm cp lib/Bio/Phylo/Matrices/Datatype.pm blib/lib/Bio/Phylo/Matrices/Datatype.pm cp lib/Bio/Phylo/Treedrawer/Svg.pm blib/lib/Bio/Phylo/Treedrawer/Svg.pm cp lib/Bio/Phylo/Unparsers/Newick.pm blib/lib/Bio/Phylo/Unparsers/Newick.pm cp lib/Bio/Phylo/Matrices/Datatype/Dna.pm blib/lib/Bio/Phylo/Matrices/Datatype/Dna.pm cp lib/Bio/Phylo/Treedrawer.pm blib/lib/Bio/Phylo/Treedrawer.pm cp lib/Bio/Phylo/Matrices/Datum.pm blib/lib/Bio/Phylo/Matrices/Datum.pm cp lib/Bio/Phylo/Taxa/TaxonLinker.pm blib/lib/Bio/Phylo/Taxa/TaxonLinker.pm cp lib/Bio/Phylo/Forest/Tree.pm blib/lib/Bio/Phylo/Forest/Tree.pm cp lib/Bio/Phylo.pm blib/lib/Bio/Phylo.pm cp lib/Bio/Phylo/._Adaptor.pm blib/lib/Bio/Phylo/._Adaptor.pm cp lib/Bio/Phylo/Unparsers/Nexus.pm blib/lib/Bio/Phylo/Unparsers/Nexus.pm cp lib/Bio/Phylo/Matrices/Datatype/Custom.pm blib/lib/Bio/Phylo/Matrices/Datatype/Custom.pm cp lib/Bio/Phylo/Mediators/TaxaMediator.pm blib/lib/Bio/Phylo/Mediators/TaxaMediator.pm cp lib/Bio/ObjectCompat.pod blib/lib/Bio/ObjectCompat.pod cp lib/Bio/Phylo/Matrices/Datatype/Mixed.pm blib/lib/Bio/Phylo/Matrices/Datatype/Mixed.pm cp lib/Bio/Phylo/Adaptor/Bioperl/Matrix.pm blib/lib/Bio/Phylo/Adaptor/Bioperl/Matrix.pm cp lib/Bio/Phylo/Adaptor/Bioperl/Tree.pm blib/lib/Bio/Phylo/Adaptor/Bioperl/Tree.pm cp lib/Bio/Phylo/Unparsers/Pagel.pm blib/lib/Bio/Phylo/Unparsers/Pagel.pm cp lib/Bio/Phylo/Matrices/Datatype/Rna.pm blib/lib/Bio/Phylo/Matrices/Datatype/Rna.pm cp lib/Bio/Phylo/Matrices/Datatype/Continuous.pm blib/lib/Bio/Phylo/Matrices/Datatype/Continuous.pm cp bin/dnd2svg.pl blib/script/dnd2svg.pl /home/chris/dev/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/dnd2svg.pl cp bin/bremer.pl blib/script/bremer.pl /home/chris/dev/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/bremer.pl cp bin/droptip.pl blib/script/droptip.pl /home/chris/dev/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/droptip.pl cp bin/postmb.pl blib/script/postmb.pl /home/chris/dev/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/postmb.pl cp bin/age2bl.pl blib/script/age2bl.pl /home/chris/dev/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/age2bl.pl cp bin/LRmb.pl blib/script/LRmb.pl /home/chris/dev/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/LRmb.pl Manifying blib/man3/Bio::Phylo::Forest.3 Manifying blib/man3/Bio::Phylo::Parsers::Nexus.3 Manifying blib/man3/Bio::Phylo::Matrices::TypeSafeData.3 Manifying blib/man3/Bio::Phylo::Matrices.3 Manifying blib/man3/Bio::Phylo::Forest::Node.3 Manifying blib/man3/Bio::Phylo::Adaptor.3 Manifying blib/man3/Bio::Phylo::Util::IDPool.3 Manifying blib/man3/Bio::Phylo::Taxa::Taxon.3 Manifying blib/man3/Bio::Phylo::Taxa.3 Manifying blib/man3/Bio::Phylo::Unparsers::Mrp.3 Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Protein.3 Manifying blib/man3/Bio::Phylo::Manual.3 Manifying blib/man3/Bio::Phylo::IO.3 Manifying blib/man3/Bio::Phylo::Parsers::Newick.3 Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Standard.3 Manifying blib/man3/Bio::Phylo::Util::CONSTANT.3 Manifying blib/man3/Bio::Phylo::Util::Exceptions.3 Manifying blib/man3/Bio::Phylo::Parsers::Table.3 Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Restriction.3 Manifying blib/man3/Bio::Phylo::Matrices::Matrix.3 Manifying blib/man3/Bio::Phylo::Adaptor::Bioperl::Node.3 Manifying blib/man3/Bio::Phylo::Listable.3 Manifying blib/man3/Bio::Phylo::Util::XMLWritable.3 Manifying blib/man3/Bio::Phylo::Parsers::Taxlist.3 Manifying blib/man3/Bio::Phylo::Generator.3 Manifying blib/man3/Bio::Phylo::Matrices::Datatype.3 Manifying blib/man3/Bio::Phylo::Unparsers::Newick.3 Manifying blib/man3/Bio::Phylo::Treedrawer::Svg.3 Manifying blib/man3/Bio::Phylo::Treedrawer.3 Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Dna.3 Manifying blib/man3/Bio::Phylo.3 Manifying blib/man3/Bio::Phylo::Forest::Tree.3 Manifying blib/man3/Bio::Phylo::Unparsers::Nexus.3 Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Custom.3 Manifying blib/man3/Bio::Phylo::Mediators::TaxaMediator.3 Manifying blib/man3/Bio::ObjectCompat.3 Manifying blib/man3/Bio::Phylo::Unparsers::Pagel.3 Manifying blib/man3/Bio::Phylo::Adaptor::Bioperl::Tree.3 Manifying blib/man3/Bio::Phylo::Matrices::Datatype::Rna.3 [ERROR] [Fri Mar 30 08:18:36 2007] MAKE TEST failed: PERL_DL_NONLAZY=1 /home/chris/dev/perl588/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/00-load..........# Testing Bio::Phylo 0.16_RC1_3319, Perl 5.008008 ok t/01-phylo.........ok t/02-newick........ok t/03-node..........ok t/04-generator.....ok t/05-trees.........ok t/06-tree..........ok t/07-unparse.......ok t/08-datum.........ok t/09-matrix........ok t/10-matrices......ok t/11-taxon.........ok t/12-taxa..........ok t/13-listable......ok t/14-nexus.........ok t/15-table.........ok t/16-unparse.......ok t/17-parse.........ok t/18-taxlist.......ok t/19-svg...........ok t/pod-coverage..... # Failed test 'Pod coverage on Bio::Phylo::._Adaptor' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::._Adaptor: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Taxa::._TaxonLinker' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Taxa::._TaxonLinker: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Taxa::TaxaLinker' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Taxa::TaxaLinker: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Taxa::._TaxaLinker' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Taxa::._TaxaLinker: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Taxa::TaxonLinker' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Taxa::TaxonLinker: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Matrices::._TypeSafeData' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Matrices::._TypeSafeData: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Matrices::._Datatype' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Matrices::._Datatype: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Matrices::Datum' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Matrices::Datum: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Util::._XMLWritable' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Util::._XMLWritable: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Matrices::Datatype::Mixed' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Matrices::Datatype::Mixed: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Matrices::Datatype::Continuous' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Matrices::Datatype::Continuous: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Adaptor::Bioperl::Datum' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Adaptor::Bioperl::Datum: couldn't find pod # Failed test 'Pod coverage on Bio::Phylo::Adaptor::Bioperl::Matrix' # at /home/chris/dev/perl588/lib/site_perl/5.8.8/Test/Pod/Coverage.pm line 126. # Bio::Phylo::Adaptor::Bioperl::Matrix: couldn't find pod # Looks like you failed 13 tests of 50. dubious Test returned status 13 (wstat 3328, 0xd00) DIED. FAILED tests 10, 15, 17-19, 21-22, 25, 32, 44, 46, 48-49 Failed 13/50 tests, 74.00% okay t/pod..............skipped all skipped: Test::Pod 1.14 required for testing POD t/regress_18208....ok t/regress_21209....ok t/regress_21417....ok t/regress_22813....ok Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/pod-coverage.t 13 3328 50 13 10 15 17-19 21-22 25 32 44 46 48-49 1 test skipped. Failed 1/26 test scripts. 13/342 subtests failed. Files=26, Tests=342, 14 wallclock secs (11.85 cusr + 1.30 csys = 13.15 CPU) Failed 1/26 test programs. 13/342 subtests failed. gmake: *** [test_dynamic] Error 25 PREREQUISITES: Here is a list of prerequisites you specified and versions we managed to load: Exception::Class 1.23 IO::String 1.08 Math::Random 0.69 SVG 2.33 Scalar::Util 1.19 Test::More 0.67 ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: AUTOMATED_TESTING = 1 PATH = /usr/bin:/bin:/usr/pkg/bin:/usr/local/bin:/usr/X11R6/bin PERL5LIB = :/home/chris/.cpanplus/5.8.8/build/IO-String-1.08/blib/lib:/home/chris/.cpanplus/5.8.8/build/IO-String-1.08/blib/arch:/home/chris/.cpanplus/5.8.8/build/IO-String-1.08/blib:/home/chris/.cpanplus/5.8.8/build/Math-Random-0.69/blib/lib:/home/chris/.cpanplus/5.8.8/build/Math-Random-0.69/blib/arch:/home/chris/.cpanplus/5.8.8/build/Math-Random-0.69/blib:/home/chris/.cpanplus/5.8.8/build/Math-Random-0.69/blib/lib:/home/chris/.cpanplus/5.8.8/build/Math-Random-0.69/blib/arch:/home/chris/.cpanplus/5.8.8/build/Math-Random-0.69/blib:/home/chris/.cpanplus/5.8.8/build/SVG-2.33/blib/lib:/home/chris/.cpanplus/5.8.8/build/SVG-2.33/blib/arch:/home/chris/.cpanplus/5.8.8/build/SVG-2.33/blib:/home/chris/.cpanplus/5.8.8/build/SVG-2.33/blib/lib:/home/chris/.cpanplus/5.8.8/build/SVG-2.33/blib/arch:/home/chris/.cpanplus/5.8.8/build/SVG-2.33/blib:/home/chris/.cpanplus/5.8.8/build/Bio-Phylo-0.16_RC1/blib/lib:/home/chris/.cpanplus/5.8.8/build/Bio-Phylo-0.16_RC1/blib/arch:/home/chris/.cpanplus/5.8.8/build/Bio-Phylo-0.16_RC1/blib PERL5_CPANPLUS_IS_RUNNING = 21941 PERL_MM_USE_DEFAULT = 1 SHELL = /usr/pkg/bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /home/chris/dev/perl588/bin/perl UID: $< = 1001 EUID: $> = 1001 GID: $( = 100 0 100 EGID: $) = 100 0 100 ------------------------------- -- Summary of my perl5 (revision 5 version 8 subversion 8) configuration: Platform: osname=netbsd, osvers=3.0, archname=i386-netbsd-thread-multi-64int uname='netbsd canker.bingosnet.co.uk 3.0 netbsd 3.0 (generic_laptop) #0: mon dec 19 01:08:52 utc 2005 [EMAIL PROTECTED]:homebuildsabnetbsd-3-0-releasei386200512182024z-objhomebuildsabnetbsd-3-0-releasesrcsysarchi386compilegeneric_laptop i386 ' config_args='' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=define use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/pkg/include', optimize='-O', cppflags='-fno-strict-aliasing -pipe -I/usr/pkg/include' ccversion='', gccversion='3.3.3 (NetBSD nb3 20040520)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib -L/usr/pkg/lib' libpth=/usr/pkg/lib /lib /usr/lib libs=-lgdbm -lm -lcrypt -lutil -lc -lposix -lpthread perllibs=-lm -lcrypt -lutil -lc -lposix -lpthread libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E ' cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared -L/usr/pkg/lib'
