This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear Alexandre Masselot, This is a computer-generated test report for InSilicoSpectro-0.9.9, created automatically by CPAN::Reporter, version 0.46, and sent to the CPAN Testers mailing list. If you have received this email directly, it is because the person testing your distribution chose to send a copy to your CPAN email address; there may be a delay before the official report is received and processed by CPAN Testers. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. Sections of this report: * Tester comments * Prerequisites * Environment and other context * Test output ------------------------------ TESTER COMMENTS ------------------------------ Additional comments from tester: [none provided] ------------------------------ PREREQUISITES ------------------------------ Prerequisite modules loaded: requires: Module Need Have ---------------- ---- ----- Archive::Zip 0 1.20 Compress::Zlib 0 2.003 Digest::MD5 0 2.36 File::Find::Rule 0 0.30 File::Temp 0 0.18 GD 0 2.35 GD::Graph 0 1.44 GD::Text 0 0.86 Getopt::Long 0 2.36 MIME::Base64 0 3.07 XML::Parser 0 2.34 XML::Twig 3.14 3.29 ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: LANG = en_GB LANGUAGE = en_GB:en_US:en_GB:en PATH = /usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games PERL5LIB = PERL5_CPANPLUS_IS_RUNNING = 1 PERL5_CPAN_IS_RUNNING = 1 SHELL = /bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /home/david/cpantesting/perl-5.6.2/bin/perl UID: $< = 1000 EUID: $> = 1000 GID: $( = 1000 46 44 29 25 24 20 1000 EGID: $) = 1000 46 44 29 25 24 20 1000 Perl module toolchain versions installed: Module Have ------------------- ------- CPAN 1.9102 Cwd 2.04 ExtUtils::CBuilder n/a ExtUtils::Command 1.09_01 ExtUtils::Install 1.41 ExtUtils::MakeMaker 6.31 ExtUtils::Manifest 1.48 ExtUtils::ParseXS n/a File::Spec 0.86 Module::Build 0.2808 Module::Signature n/a Test::Harness 2.64 Test::More 0.67 version 0.7203 ------------------------------ TEST OUTPUT ------------------------------ Output from '/usr/bin/make test': PERL_DL_NONLAZY=1 /home/david/cpantesting/perl-5.6.2/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/InSilico....sh: t/InSilico/testSequence.pl: Permission denied # Failed test at t/InSilico.t line 7. # got: '32256' # expected: '0' sh: t/InSilico/testAASequence.pl: Permission denied # Failed test at t/InSilico.t line 9. # got: '32256' # expected: '0' sh: t/InSilico/testAASequence.pl: Permission denied # Failed test at t/InSilico.t line 10. # got: '32256' # expected: '0' sh: t/InSilico/testPeptide.pl: Permission denied # Failed test at t/InSilico.t line 12. # got: '32256' # expected: '0' sh: t/InSilico/testPeptide.pl: Permission denied # Failed test at t/InSilico.t line 13. # got: '32256' # expected: '0' sh: t/InSilico/testPeptide.pl: Permission denied # Failed test at t/InSilico.t line 14. # got: '32256' # expected: '0' sh: t/InSilico/testCleavEnzyme.pl: Permission denied # Failed test at t/InSilico.t line 16. # got: '32256' # expected: '0' sh: t/InSilico/testModRes.pl: Permission denied # Failed test at t/InSilico.t line 18. # got: '32256' # expected: '0' sh: t/InSilico/testModRes.pl: Permission denied # Failed test at t/InSilico.t line 19. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigest.pl: Permission denied # Failed test at t/InSilico.t line 21. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigest.pl: Permission denied # Failed test at t/InSilico.t line 22. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigest.pl: Permission denied # Failed test at t/InSilico.t line 23. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigest.pl: Permission denied # Failed test at t/InSilico.t line 24. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigest.pl: Permission denied # Failed test at t/InSilico.t line 25. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigestOOP.pl: Permission denied # Failed test at t/InSilico.t line 27. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigestOOP.pl: Permission denied # Failed test at t/InSilico.t line 28. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigestOOP.pl: Permission denied # Failed test at t/InSilico.t line 29. # got: '32256' # expected: '0' sh: t/InSilico/testCalcDigestOOP.pl: Permission denied # Failed test at t/InSilico.t line 30. # got: '32256' # expected: '0' sh: t/InSilico/testCalcFrag.pl: Permission denied # Failed test at t/InSilico.t line 32. # got: '32256' # expected: '0' sh: t/InSilico/testCalcFrag.pl: Permission denied # Failed test at t/InSilico.t line 33. # got: '32256' # expected: '0' sh: t/InSilico/testCalcFragOOP.pl: Permission denied # Failed test at t/InSilico.t line 35. # got: '32256' # expected: '0' sh: t/InSilico/testCalcMatch.pl: Permission denied # Failed test at t/InSilico.t line 37. # got: '32256' # expected: '0' sh: t/InSilico/testCalcMatch.pl: Permission denied # Failed test at t/InSilico.t line 38. # got: '32256' # expected: '0' sh: t/InSilico/testCalcMatch.pl: Permission denied # Failed test at t/InSilico.t line 39. # got: '32256' # expected: '0' sh: t/InSilico/testCalcMatchOOP.pl: Permission denied # Failed test at t/InSilico.t line 41. # got: '32256' # expected: '0' sh: t/InSilico/testCalcMatchOOP.pl: Permission denied # Failed test at t/InSilico.t line 42. # got: '32256' # expected: '0' sh: t/InSilico/testCalcMatchOOP.pl: Permission denied # Failed test at t/InSilico.t line 43. # got: '32256' # expected: '0' sh: t/InSilico/testCalcPMFMatch.pl: Permission denied # Failed test at t/InSilico.t line 45. # got: '32256' # expected: '0' sh: t/InSilico/testCalcPMFMatch.pl: Permission denied # Failed test at t/InSilico.t line 46. # got: '32256' # expected: '0' sh: t/InSilico/testCalcPMFMatch.pl: Permission denied # Failed test at t/InSilico.t line 47. # got: '32256' # expected: '0' sh: t/InSilico/testCalcPMFMatchOOP.pl: Permission denied # Failed test at t/InSilico.t line 49. # got: '32256' # expected: '0' sh: t/InSilico/testCalcPMFMatchOOP.pl: Permission denied # Failed test at t/InSilico.t line 50. # got: '32256' # expected: '0' sh: t/InSilico/testCalcVarpept.pl: Permission denied # Failed test at t/InSilico.t line 52. # got: '32256' # expected: '0' sh: t/InSilico/testCalcVarpept.pl: Permission denied # Failed test at t/InSilico.t line 53. # got: '32256' # expected: '0' sh: t/InSilico/testCalcVarpept.pl: Permission denied # Failed test at t/InSilico.t line 54. # got: '32256' # expected: '0' sh: t/InSilico/testCalcVarpept.pl: Permission denied # Failed test at t/InSilico.t line 55. # got: '32256' # expected: '0' sh: t/InSilico/testMSMSOutText.pl: Permission denied # Failed test at t/InSilico.t line 57. # got: '32256' # expected: '0' sh: t/InSilico/testMSMSOutText.pl: Permission denied # Failed test at t/InSilico.t line 58. # got: '32256' # expected: '0' sh: t/InSilico/testMSMSOutHtml.pl: Permission denied # Failed test at t/InSilico.t line 59. # got: '32256' # expected: '0' sh: t/InSilico/testMSMSOutLatex.pl: Permission denied # Failed test at t/InSilico.t line 60. # got: '32256' # expected: '0' sh: t/InSilico/testMSMSOutPlot.pl: Permission denied # Failed test at t/InSilico.t line 61. # got: '32256' # expected: '0' sh: t/InSilico/testMSMSOutLegend.pl: Permission denied # Failed test at t/InSilico.t line 62. # got: '32256' # expected: '0' # Looks like you failed 42 tests of 44. dubious Test returned status 42 (wstat 10752, 0x2a00) DIED. FAILED tests 1-42 Failed 42/44 tests, 4.55% okay (less 2 skipped tests: 0 okay, 0.00%) t/Spectra.....Subroutine getReadFmtList redefined at /home/david/_/_/perl-5.6.2/.cpan/build/InSilicoSpectro-0.9.9-ApHaMA/blib/lib/InSilicoSpectro/Spectra/MSSpectra.pm line 375. Subroutine getFmtDescr redefined at /home/david/_/_/perl-5.6.2/.cpan/build/InSilicoSpectro-0.9.9-ApHaMA/blib/lib/InSilicoSpectro/Spectra/MSSpectra.pm line 391. sh: t/Spectra/testPeakDescriptor.pl: Permission denied # Failed test at t/Spectra.t line 19. # got: '32256' # expected: '0' sh: t/Spectra/testSpectra.pl: Permission denied # Failed test at t/Spectra.t line 20. # got: '32256' # expected: '0' # Looks like you failed 2 tests of 3. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 2-3 Failed 2/3 tests, 33.33% okay t/Utils.......sh: t/Utils/testIO.pl: Permission denied # Failed test at t/Utils.t line 6. # got: '32256' # expected: '0' sh: t/Utils/testIO.pl: Permission denied # Failed test at t/Utils.t line 7. # got: '32256' # expected: '0' # Looks like you failed 2 tests of 2. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/InSilico.t 42 10752 44 42 1-42 t/Spectra.t 2 512 3 2 2-3 t/Utils.t 2 512 2 2 1-2 2 subtests skipped. Failed 3/3 test scripts. 46/49 subtests failed. Files=3, Tests=49, 1 wallclock secs ( 0.73 cusr + 0.37 csys = 1.10 CPU) Failed 3/3 test programs. 46/49 subtests failed. make: *** [test_dynamic] Error 11 -- Summary of my perl5 (revision 5.0 version 6 subversion 2) configuration: Platform: osname=linux, osvers=2.4.27-3-686, archname=i686-linux uname='linux pigsty 2.4.27-3-686 #1 tue dec 5 21:03:54 utc 2006 i686 gnulinux ' config_args='-Dprefix=/home/david/cpantesting/perl-5.6.2 -de' hint=recommended, useposix=true, d_sigaction=define usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef useperlio=undef d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O3', cppflags='-fno-strict-aliasing' ccversion='', gccversion='3.3.5 (Debian 1:3.3.5-13)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, usemymalloc=n, prototype=define Linker and Libraries: ld='cc', ldflags =' -L/usr/local/lib' libpth=/usr/local/lib /lib /usr/lib libs=-lnsl -lgdbm -ldl -lm -lc -lcrypt -lutil perllibs=-lnsl -ldl -lm -lc -lcrypt -lutil libc=/lib/libc-2.3.2.so, so=so, useshrplib=false, libperl=libperl.a Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic' cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
