This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/

Please cc any replies to [email protected] to keep other
test volunteers informed and to prevent any duplicate effort.

--
Dear Ewan Birney,
    
This is a computer-generated test report for bioperl-1.4, created
automatically by CPAN::Reporter, version 0.48, and sent to the CPAN 
Testers mailing list.  If you have received this email directly, it is 
because the person testing your distribution chose to send a copy to your 
CPAN email address; there may be a delay before the official report is
received and processed by CPAN Testers.

Thank you for uploading your work to CPAN.  However, it appears that
there were some problems testing your distribution.

Sections of this report:

    * Tester comments
    * Prerequisites
    * Environment and other context
    * Test output

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

[none provided]

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module         Need Have 
    -------------- ---- -----
    DB_File        0    1.815
    File::Spec     0    3.25 
    File::Temp     0    0.18 
    HTML::Entities 0    1.35 
    IO::Scalar     0    2.110
    IO::String     0    1.08 

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    PATH = 
/arpa/af/d/drhyde/bin:/usr/pkg/bin:/usr/bin:/bin:/usr/pkg/games:/usr/pkg/X11R6/bin
    PERL5LIB = 
    PERL5_CPANPLUS_IS_RUNNING = 1
    PERL5_CPAN_IS_RUNNING = 1
    SHELL = /usr/pkg/bin/bash
    TERM = vt100

Perl special variables (and OS-specific diagnostics, for MSWin32):

    Perl: $^X = /arpa/af/d/drhyde/perl-5.9.5/bin/perl5.9.5
    UID:  $<  = 40631
    EUID: $>  = 40631
    GID:  $(  = 500 500
    EGID: $)  = 500 500

Perl module toolchain versions installed:

    Module              Have   
    ------------------- -------
    CPAN                1.9102 
    Cwd                 3.25   
    ExtUtils::CBuilder  0.19   
    ExtUtils::Command   1.13   
    ExtUtils::Install   1.41_01
    ExtUtils::MakeMaker 6.36   
    ExtUtils::Manifest  1.51_01
    ExtUtils::ParseXS   2.18   
    File::Spec          3.25   
    Module::Build       0.2808 
    Module::Signature   n/a    
    Test::Harness       2.64   
    Test::More          0.70   
    version             0.7203 

------------------------------
TEST OUTPUT
------------------------------

Output from '/usr/pkg/bin/make test':

PERL_DL_NONLAZY=1 /arpa/af/d/drhyde/perl-5.9.5/bin/perl5.9.5 
"-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/AAChange...................ok
t/AAReverseMutate............ok
t/AlignIO....................ok
t/AlignStats.................ok
t/Allele.....................ok
t/Alphabet...................ok
t/Annotation.................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/AnnotationAdaptor..........ok
t/Assembly...................ok
t/Biblio.....................SOAP::Lite not installed. Skipping some tests.
XML::Parser not installed. Skipping some tests.
ok
        22/24 skipped: various reasons
t/Biblio_biofetch............ok
t/BiblioReferences...........ok
t/BioDBGFF...................ok
t/BioFetch_DB................Can't locate LWP/UserAgent.pm in @INC (@INC 
contains: t . ./blib/lib /tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/arch 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5) at Bio/DB/WebDBSeqI.pm line 
86.
BEGIN failed--compilation aborted at Bio/DB/WebDBSeqI.pm line 86.
Compilation failed in require at Bio/DB/BioFetch.pm line 16.
BEGIN failed--compilation aborted at Bio/DB/BioFetch.pm line 16.
Compilation failed in require at t/BioFetch_DB.t line 51.
dubious
        Test returned status 2 (wstat 512, 0x200)
        after all the subtests completed successfully
t/BioGraphics................GD or Text::Shellwords modules are not installed. 
This means that Bio::Graphics module is unusable. Skipping tests.
ok
t/BlastIndex.................ok
t/BPbl2seq...................ok
t/BPlite.....................ok
t/BPpsilite..................ok
t/Chain......................ok
t/cigarstring................ok
t/ClusterIO..................XML::Parser::PerlSAX not loaded. This means 
ClusterIO::dbsnp test cannot be executed. Skipping
ok
t/Coalescent.................ok
t/CodonTable.................ok
t/consed.....................ok
t/CoordinateGraph............ok
t/CoordinateMapper...........ok
t/Correlate..................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/CytoMap....................ok
t/DB.........................IO::String or LWP::UserAgent or HTTP::Request not 
installed. This means the Bio::DB::* modules are not usable. Skipping tests.
ok
t/DBCUTG.....................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/DBCUTG.t line 31.
ok
t/DBFasta....................ok
t/DNAMutation................ok
t/Domcut.....................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/Domcut.t line 31.
ok
t/ECnumber...................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/ELM........................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/ELM.t line 30.
ok
t/EMBL_DB....................Can't locate HTTP/Request/Common.pm in @INC (@INC 
contains: t /tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/arch 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5 .) at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/DBFetch.pm line 74.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/DBFetch.pm line 74.
Compilation failed in require at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/EMBL.pm line 103.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/EMBL.pm line 103.
Compilation failed in require at t/EMBL_DB.t line 46.
dubious
        Test returned status 2 (wstat 512, 0x200)
        after all the subtests completed successfully
t/EMBOSS_Tools...............ok
t/EncodedSeq.................ok
t/ePCR.......................ok
t/ESEfinder..................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/ESEfinder.t line 32.
Can't locate HTTP/Request/Common.pm in @INC (@INC contains: t 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/arch 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5 .) at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Tools/Analysis/DNA/ESEfinder.pm
 line 138.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Tools/Analysis/DNA/ESEfinder.pm
 line 138.
Compilation failed in require at t/ESEfinder.t line 55.
BEGIN failed--compilation aborted at t/ESEfinder.t line 55.
dubious
        Test returned status 2 (wstat 512, 0x200)
        after all the subtests completed successfully
t/est2genome.................ok
t/Exception..................ok
t/Exonerate..................ok
t/flat.......................ok
t/FootPrinter................ok
t/game.......................XML::Parser::PerlSAX not loaded. This means game 
test cannot be executed. Skipping
ok
t/GDB........................Cannot load LWP::UserAgent or HTML::Parser, 
skipping tests
ok
t/GeneCoordinateMapper.......
-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id 
(at least one sublocation does!)
---------------------------------------------------

-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id 
(at least one sublocation does!)
---------------------------------------------------
Use of uninitialized value in concatenation (.) or string at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Coordinate/GeneMapper.pm line 
814.
ok
t/Geneid.....................ok
t/Genewise...................ok
        2/51 skipped: various reasons
t/Genomewise.................ok
t/Genpred....................ok
t/GFF........................Filehandle GEN0 opened only for output at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/IO.pm line 440.
Filehandle GEN1 opened only for output at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/IO.pm line 440.
ok
t/GOR4.......................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/GOR4.t line 30.
ok
t/GOterm.....................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/GuessSeqFormat.............Bio::SeqIO: game cannot be found
Exception 
------------- EXCEPTION  -------------
MSG: Failed to load module Bio::SeqIO::game. Can't locate XML/Parser/PerlSAX.pm 
in @INC (@INC contains: t .. /tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/arch 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5 .) at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO/game/gameSubs.pm line 
70.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO/game/gameSubs.pm line 
70.
Compilation failed in require at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO/game/gameHandler.pm 
line 62.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO/game/gameHandler.pm 
line 62.
Compilation failed in require at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO/game.pm line 76.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO/game.pm line 76.
Compilation failed in require at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Root.pm line 394.

STACK Bio::Root::Root::_load_module 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Root.pm:396
STACK (eval) /tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO.pm:549
STACK Bio::SeqIO::_load_format_module 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO.pm:548
STACK Bio::SeqIO::new 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/SeqIO.pm:377
STACK (eval) t/GuessSeqFormat.t:61
STACK toplevel t/GuessSeqFormat.t:60

--------------------------------------

For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
FAILED test 11
        Failed 1/46 tests, 97.83% okay
t/hmmer......................ok
t/HNN........................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/HNN.t line 30.
ok
t/Index......................ok
t/InstanceSite...............ok
t/InterProParser.............XML::Parser not installed. This means that 
InterPro Ontology Parsing module is not usable. Skipping tests.
ok
t/IUPAC......................ok
t/largefasta.................ok
t/largepseq..................ok
t/LinkageMap.................ok
t/LiveSeq....................ok
t/LocatableSeq...............ok
t/Location...................ok
t/LocationFactory............ok
t/LocusLink..................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/lucy.......................ok
t/Map........................ok
t/MapIO......................ok
t/Matrix.....................ok
t/Measure....................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/MeSH.......................IO::String or LWP::UserAgent or HTTP::Request not 
installed. This means the MeSH modules are not usable. Skipping tests.
ok
t/MetaSeq....................ok
t/MicrosatelliteMarker.......ok
t/MiniMIMentry...............Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/MitoProt...................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/MitoProt.t line 29.
ok
t/Molphy.....................ok
t/multiple_fasta.............ok
t/Mutation...................ok
t/Mutator....................ok
t/NetPhos....................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/NetPhos.t line 31.
ok
t/Node.......................ok
t/OddCodes...................ok
t/OMIMentry..................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/OMIMentryAllelicVariant....Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/OMIMparser.................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/Ontology...................
Graph.pm doesn't seem to be installed on this system -- the GO Parser needs 
it...

ok
t/OntologyEngine.............Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/PAML.......................ok
t/Perl.......................ok
t/phd........................ok
t/Phenotype..................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/PhylipDist.................ok
t/pICalculator...............ok
t/Pictogram..................SVG not installed, skipping tests at t/Pictogram.t 
line 29.
ok
t/PopGen.....................ok
t/PopGenSims.................ok
t/primaryqual................ok
t/PrimarySeq.................ok
t/primedseq..................ok
t/Primer.....................ok
t/primer3....................ok
t/Promoterwise...............ok
t/ProtDist...................ok
t/psm........................ok
t/QRNA.......................ok
t/qual.......................ok
t/RandDistFunctions..........ok
t/RandomTreeFactory..........ok
t/Range......................ok
t/RangeI.....................ok
t/RefSeq.....................Can't locate HTTP/Request/Common.pm in @INC (@INC 
contains: t /tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/arch 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5 .) at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/DBFetch.pm line 74.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/DBFetch.pm line 74.
Compilation failed in require at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/RefSeq.pm line 108.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/DB/RefSeq.pm line 108.
Compilation failed in require at t/RefSeq.t line 46.
dubious
        Test returned status 2 (wstat 512, 0x200)
        after all the subtests completed successfully
t/Registry...................DB_File and BerkeleyDB not found. Skipping DB_File 
tests
ok
t/Relationship...............Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/RelationshipType...........Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/RemoteBlast................Can't locate LWP.pm in @INC (@INC contains: t 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/arch 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/5.9.5 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5/alpha-netbsd 
/arpa/af/d/drhyde/perl-5.9.5/lib/site_perl/5.9.5 .) at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Tools/Run/RemoteBlast.pm line 
144.
BEGIN failed--compilation aborted at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Tools/Run/RemoteBlast.pm line 
144.
Compilation failed in require at t/RemoteBlast.t line 38.
dubious
        Test returned status 2 (wstat 512, 0x200)
        after all the subtests completed successfully
t/RepeatMasker...............ok
t/RestrictionAnalysis........ok
t/RestrictionEnzyme..........ok
t/RestrictionIO..............ok
t/RNAChange..................ok
t/RootI......................ok
t/RootIO.....................ok
t/RootStorable...............ok
t/Scansite...................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/Scansite.t line 29.
ok
t/scf........................ok
t/SearchDist.................ok
t/SearchIO...................XML::Parser::PerlSAX or HTML::Entities not loaded. 
This means SearchIO::blastxml test cannot be executed. Skipping
ok
t/Seq........................ok
t/SeqAnalysisParser..........ok
t/SeqBuilder.................ok
t/SeqDiff....................ok
t/SeqFeatCollection..........ok
t/SeqFeature.................skipping DB tests...
Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
Can't locate object method "new" via package "Bio::DB::GenBank" at 
t/SeqFeature.t line 338, <GEN1> line 125.
dubious
        Test returned status 9 (wstat 2304, 0x900)
        after all the subtests completed successfully
t/seqfeaturePrimer...........ok
t/SeqIO......................ok
        3/235 skipped: various reasons
t/SeqPattern.................ok
t/SeqStats...................ok
t/SequenceFamily.............ok
t/sequencetrace..............ok
t/SeqUtils...................ok
t/seqwithquality.............ok
t/SeqWords...................ok
t/Sigcleave..................ok
t/Sim4.......................ok
t/SimilarityPair.............ok
t/SimpleAlign................ok
t/simpleGOparser.............
Graph.pm doesn't seem to be installed on this system -- the GO Parser needs 
it...

ok
t/sirna......................ok
t/SiteMatrix.................ok
t/SNP........................ok
t/Sopma......................IO::String or LWP::UserAgent not installed. This 
means that the module is not usable. Skipping tests at t/Sopma.t line 30.
ok
t/Species....................ok
t/splicedseq.................Skipping remote location tests
ok
t/StandAloneBlast............ok
t/StructIO...................ok
t/Structure..................ok
t/Swiss......................ok
t/Symbol.....................ok
t/Taxonomy...................ok
t/Tempfile...................ok
t/Term.......................Useless localization of scalar assignment at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/Bio/Root/Object.pm line 699.
ok
t/Tools......................ok
t/Tree.......................ok
t/TreeIO.....................ok
t/trim.......................ok
t/tutorial...................LWP::UserAgent or HTTP::Request or IO::String 
doesn't appear to be loaded, cannot run the access_remote_db method at 
/tmp/drhyde/build/bioperl-1.4-oSNSn3/blib/lib/bptutorial.pl line 2900.
Cannot run demo_xml
        Problem parsing GAME format or missing necessary installed modules 
XML::Parser XML::Parser::PerlSAX
ok
t/UCSCParsers................ok
t/Unflattener................ok
t/Unflattener2...............ok
t/UniGene....................ok
t/Variation_IO...............
The XML-format conversion requires the CPAN modules XML::Twig, XML::Writer, and 
IO::String to be installed on your system, which they probably aren't. Skipping 
these tests.
ok
t/WABA.......................ok
t/XEMBL_DB...................SOAP::Lite and/or XML::DOM not installed. This 
means that Bio::DB::XEMBL module is not usable. Skipping tests.
ok
Failed Test        Stat Wstat Total Fail  List of Failed
-------------------------------------------------------------------------------
t/BioFetch_DB.t       2   512    27    0  ??
t/EMBL_DB.t           2   512    15    0  ??
t/ESEfinder.t         2   512    12    0  ??
t/GuessSeqFormat.t               46    1  11
t/RefSeq.t            2   512    13    0  ??
t/RemoteBlast.t       2   512     6    0  ??
t/SeqFeature.t        9  2304    74    0  ??
27 subtests skipped.
Failed 7/179 test scripts. 1/8122 subtests failed.
Files=179, Tests=8122, 434 wallclock secs (288.95 cusr + 16.45 csys = 305.39 
CPU)
Failed 7/179 test programs. 1/8122 subtests failed.
*** Error code 255

Stop.
make: stopped in /tmp/drhyde/build/bioperl-1.4-oSNSn3


--

Summary of my perl5 (revision 5 version 9 subversion 5) configuration:
  Platform:
    osname=netbsd, osvers=2.1.0_stable, archname=alpha-netbsd
    uname='netbsd sdf 2.1.0_stable netbsd 2.1.0_stable (sdf) #0: fri mar 30 
02:24:32 utc 2007 [EMAIL PROTECTED]:varsysarchalphacompilesdf alpha '
    config_args='-Dusedevel -Dprefix=/arpa/af/d/drhyde/perl-5.9.5 -de'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/pkg/include',
    optimize='-O',
    cppflags='-fno-strict-aliasing -pipe -I/usr/pkg/include'
    ccversion='', gccversion='3.3.3 (NetBSD nb3 20040520)', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=8
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', 
lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib 
-L/usr/pkg/lib'
    libpth=/usr/pkg/lib /lib /usr/lib
    libs=-lbind -lgdbm -lm -lcrypt -lutil -lc -lposix
    perllibs=-lbind -lm -lcrypt -lutil -lc -lposix
    libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E '
    cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared  
-L/usr/pkg/lib'

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