This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear Peter Ernst, This is a computer-generated test report for Bio-Emboss-5.0.0.1, created automatically by CPAN::Reporter, version 0.99_07, and sent to the CPAN Testers mailing list. If you have received this email directly, it is because the person testing your distribution chose to send a copy to your CPAN email address; there may be a delay before the official report is received and processed by CPAN Testers. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. Sections of this report: * Tester comments * Prerequisites * Environment and other context * Test output ------------------------------ TESTER COMMENTS ------------------------------ Additional comments from tester: [none provided] ------------------------------ PREREQUISITES ------------------------------ Prerequisite modules loaded: No requirements found ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: LANG = C PATH = /usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin PERL5LIB = /home/sand/.cpan/build/Encode-IBM-0.05-CTsomJ/blib/arch:/home/sand/.cpan/build/Encode-IBM-0.05-CTsomJ/blib/lib PERL5_CPANPLUS_IS_RUNNING = 9420 PERL5_CPAN_IS_EXECUTING = /home/sand/.cpan/build/Bio-Emboss-5.0.0.1-nFtvLs/Makefile.PL PERL5_CPAN_IS_RUNNING = 9420 PERL_MM_USE_DEFAULT = 1 SHELL = /usr/bin/zsh TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /home/src/perl/repoperls/installed-perls/perl/psqWNC1/[EMAIL PROTECTED]/bin/perl UID: $< = 1005 EUID: $> = 1005 GID: $( = 1005 1005 EGID: $) = 1005 1005 Perl module toolchain versions installed: Module Have ------------------- ------- CPAN 1.91_53 Cwd 3.25 ExtUtils::CBuilder 0.19 ExtUtils::Command 1.13 ExtUtils::Install 1.41_04 ExtUtils::MakeMaker 6.36_01 ExtUtils::Manifest 1.51_01 ExtUtils::ParseXS 2.18 File::Spec 3.25 Module::Build 0.2808 Module::Signature 0.55 Test::Harness 2.64 Test::More 0.70 YAML 0.65 YAML::Syck 0.97 version 0.7203 ------------------------------ TEST OUTPUT ------------------------------ Output from '/usr/bin/make': cp Emboss.pm blib/lib/Bio/Emboss.pm cp lib/Bio/Emboss/Methods.pm blib/lib/Bio/Emboss/Methods.pm /home/src/perl/repoperls/installed-perls/perl/psqWNC1/[EMAIL PROTECTED]/bin/perl /home/src/perl/repoperls/installed-perls/perl/psqWNC1/[EMAIL PROTECTED]/lib/5.9.5/ExtUtils/xsubpp -typemap /home/src/perl/repoperls/installed-perls/perl/psqWNC1/[EMAIL PROTECTED]/lib/5.9.5/ExtUtils/typemap -typemap typemap Emboss.xs > Emboss.xsc && mv Emboss.xsc Emboss.c cc -c -I. -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -DVERSION=\"5.0.0.1\" -DXS_VERSION=\"5.0.0.1\" -fPIC "-I/home/src/perl/repoperls/installed-perls/perl/psqWNC1/[EMAIL PROTECTED]/lib/5.9.5/i686-linux-64int/CORE" Emboss.c In file included from /usr/include/ajfeat.h:22, from /usr/include/ajax.h:31, from /usr/include/emboss.h:4, from emboss_perl.h:61, from Emboss.xs:7: /usr/include/ajreg.h:19:27: error: pcre_internal.h: No such file or directory In file included from /usr/include/ajfeat.h:22, from /usr/include/ajax.h:31, from /usr/include/emboss.h:4, from emboss_perl.h:61, from Emboss.xs:7: /usr/include/ajreg.h:40: error: expected specifier-qualifier-list before 'real_pcre' In file included from /usr/include/emboss.h:5, from emboss_perl.h:61, from Emboss.xs:7: /usr/include/ajgraph.h:29:20: error: plplot.h: No such file or directory In file included from /usr/include/emboss.h:5, from emboss_perl.h:61, from Emboss.xs:7: /usr/include/ajgraph.h:81: error: expected ')' before 'xx0' /usr/include/ajgraph.h:82: error: expected ')' before 'xx0' /usr/include/ajgraph.h:84: error: expected ')' before 'xcentre' /usr/include/ajgraph.h:115: error: expected ')' before 'xx0' /usr/include/ajgraph.h:116: error: expected ')' before 'xx0' /usr/include/ajgraph.h:117: error: expected ')' before '*' token /usr/include/ajgraph.h:135: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:136: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:136: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:146: error: expected ')' before 'xx1' /usr/include/ajgraph.h:147: error: expected ')' before '*' token /usr/include/ajgraph.h:162: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:162: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:163: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:163: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:169: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:169: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:170: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:170: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:172: error: expected ')' before 'xx0' /usr/include/ajgraph.h:173: error: expected ')' before 'xx0' /usr/include/ajgraph.h:189: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:189: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:191: error: expected ')' before 'xx1' /usr/include/ajgraph.h:192: error: expected ')' before 'xx1' /usr/include/ajgraph.h:193: error: expected ')' before 'xx1' /usr/include/ajgraph.h:194: error: expected ')' before 'xx1' /usr/include/ajgraph.h:196: error: expected ')' before 'xx1' /usr/include/ajgraph.h:198: error: expected ')' before 'xx1' /usr/include/ajgraph.h:200: error: expected ')' before 'xx1' /usr/include/ajgraph.h:203: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:204: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:204: error: expected declaration specifiers or '...' before 'PLFLT' /usr/include/ajgraph.h:283: error: expected ')' before 'xcentre' /usr/include/ajgraph.h:285: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token /usr/include/ajgraph.h:287: error: expected ')' before 'xcentre' /usr/include/ajgraph.h:291: error: expected ')' before 'xcentre' /usr/include/ajgraph.h:294: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'ajGraphTextLength' /usr/include/ajgraph.h:296: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'ajGraphTextHeight' /usr/include/ajgraph.h:297: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'ajGraphDistPts' /usr/include/ajgraph.h:298: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'ajGraphFitTextOnLine' /usr/include/ajgraph.h:302: error: expected ')' before 'xcentre' make: *** [Emboss.o] Error 1 -- Summary of my perl5 (revision 5 version 9 subversion 5) configuration: Platform: osname=linux, osvers=2.6.22-1-k7, archname=i686-linux-64int uname='linux k75 2.6.22-1-k7 #1 smp sun jul 29 15:15:55 utc 2007 i686 gnulinux ' config_args='-Dprefix=/home/src/perl/repoperls/installed-perls/perl/psqWNC1/[EMAIL PROTECTED] -Dinstallusrbinperl=n -Uversiononly -Doptimize=-g -des -Duse64bitint -Dusedevel -Duserelocatableinc' hint=recommended, useposix=true, d_sigaction=define useithreads=undef, usemultiplicity=undef useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef use64bitint=define, use64bitall=undef, uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-g', cppflags='-DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='4.1.2 20061115 (prerelease) (Debian 4.1.1-21)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags =' -L/usr/local/lib' libpth=/usr/local/lib /lib /usr/lib /usr/lib64 libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc libc=/lib/libc-2.6.1.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='2.6.1' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E' cccdlflags='-fPIC', lddlflags='-shared -g -L/usr/local/lib'
