This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear Chris Mungall, This is a computer-generated test report for go-perl-0.07_pre, created automatically by CPAN::Reporter, version 0.46, and sent to the CPAN Testers mailing list. If you have received this email directly, it is because the person testing your distribution chose to send a copy to your CPAN email address; there may be a delay before the official report is received and processed by CPAN Testers. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. Sections of this report: * Tester comments * Prerequisites * Environment and other context * Test output ------------------------------ TESTER COMMENTS ------------------------------ Additional comments from tester: [none provided] ------------------------------ PREREQUISITES ------------------------------ Prerequisite modules loaded: requires: Module Need Have ------------ ---- -------- Data::Dumper 0 2.121_08 Data::Stag 0.07 0.10 ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: LANG = en_GB LANGUAGE = en_GB:en_US:en_GB:en PATH = /usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games PERL5LIB = PERL5_CPANPLUS_IS_RUNNING = 1 PERL5_CPAN_IS_RUNNING = 1 SHELL = /bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /home/david/_/_/perl-5.8.8/bin/perl UID: $< = 1000 EUID: $> = 1000 GID: $( = 1000 46 44 29 25 24 20 1000 EGID: $) = 1000 46 44 29 25 24 20 1000 Perl module toolchain versions installed: Module Have ------------------- ------ CPAN 1.9102 Cwd 3.24 ExtUtils::CBuilder n/a ExtUtils::Command 1.09 ExtUtils::Install 1.33 ExtUtils::MakeMaker 6.30 ExtUtils::Manifest 1.46 ExtUtils::ParseXS n/a File::Spec 3.12 Module::Build 0.2808 Module::Signature n/a Test::Harness 2.64 Test::More 0.70 version 0.7203 ------------------------------ TEST OUTPUT ------------------------------ Output from '/usr/bin/make test': PERL_DL_NONLAZY=1 /home/david/_/_/perl-5.8.8/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/t010build.............Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at (eval 5) line 3. ...propagated at /home/david/cpantesting/perl-5.8.8/lib/5.8.8/base.pm line 85. BEGIN failed--compilation aborted at GO/ObjCache.pm line 33. Compilation failed in require at t/t010build.t line 13. BEGIN failed--compilation aborted at t/t010build.t line 13. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-6 Failed 6/6 tests, 0.00% okay t/t020paths.............Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at t/t020paths.t line 12. BEGIN failed--compilation aborted at t/t020paths.t line 12. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-7 Failed 7/7 tests, 0.00% okay t/t030detecterror.......ok t/t050oboformat.........No such module: GO::Handlers::obj;; Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at (eval 20) line 3. ...propagated at /home/david/cpantesting/perl-5.8.8/lib/5.8.8/base.pm line 85. BEGIN failed--compilation aborted at GO/ObjCache.pm line 33. Compilation failed in require at GO/Handlers/obj.pm line 40. BEGIN failed--compilation aborted at GO/Handlers/obj.pm line 40. Compilation failed in require at GO/Parser.pm line 607. at GO/Model/Root.pm line 65 GO::Model::Root::throw('GO::Parser', 'No such module: GO::Handlers::obj;;\x{a}Can\'t locate GO/Model/DB...') called at GO/Parser.pm line 609 GO::Parser::load_module('GO::Parser', 'GO::Handlers::obj') called at GO/Parser.pm line 546 eval {...} called at GO/Parser.pm line 545 GO::Parser::new('GO::Parser', 'HASH(0x812c048)') called at t/t050oboformat.t line 23 No such handler: obj at GO/Model/Root.pm line 65 GO::Model::Root::throw('GO::Parser=HASH(0x830961c)', 'No such handler: obj') called at GO/Parser.pm line 551 GO::Parser::new('GO::Parser', 'HASH(0x812c048)') called at t/t050oboformat.t line 23 dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-6 Failed 6/6 tests, 0.00% okay t/t060oboformat2........ok 36/36 skipped: various reasons t/t070parseannot2obj....No such module: GO::Handlers::obj;; Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at (eval 17) line 3. ...propagated at /home/david/cpantesting/perl-5.8.8/lib/5.8.8/base.pm line 85. BEGIN failed--compilation aborted at GO/ObjCache.pm line 33. Compilation failed in require at GO/Handlers/obj.pm line 40. BEGIN failed--compilation aborted at GO/Handlers/obj.pm line 40. Compilation failed in require at GO/Parser.pm line 607. at GO/Model/Root.pm line 65 GO::Model::Root::throw('GO::Parser', 'No such module: GO::Handlers::obj;;\x{a}Can\'t locate GO/Model/DB...') called at GO/Parser.pm line 609 GO::Parser::load_module('GO::Parser', 'GO::Handlers::obj') called at GO/Parser.pm line 546 eval {...} called at GO/Parser.pm line 545 GO::Parser::new('GO::Parser', 'HASH(0x812c048)') called at t/t070parseannot2obj.t line 19 No such handler: obj at GO/Model/Root.pm line 65 GO::Model::Root::throw('GO::Parser=HASH(0x830a7cc)', 'No such handler: obj') called at GO/Parser.pm line 551 GO::Parser::new('GO::Parser', 'HASH(0x812c048)') called at t/t070parseannot2obj.t line 19 dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-5 Failed 5/5 tests, 0.00% okay t/t080gofmt2............ok t/t100roundtrip.........ok 2/2 skipped: various reasons t/t110basic.............Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at GO/Basic.pm line 33. BEGIN failed--compilation aborted at GO/Basic.pm line 33. Compilation failed in require at t/t110basic.t line 21. BEGIN failed--compilation aborted at t/t110basic.t line 21. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-4 Failed 4/4 tests, 0.00% okay t/t130relations.........Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at (eval 5) line 3. ...propagated at /home/david/cpantesting/perl-5.8.8/lib/5.8.8/base.pm line 85. BEGIN failed--compilation aborted at GO/ObjCache.pm line 33. Compilation failed in require at t/t130relations.t line 13. BEGIN failed--compilation aborted at t/t130relations.t line 13. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-7 Failed 7/7 tests, 0.00% okay t/t140subgraph..........No such module: GO::Handlers::obj;; Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at (eval 17) line 3. ...propagated at /home/david/cpantesting/perl-5.8.8/lib/5.8.8/base.pm line 85. BEGIN failed--compilation aborted at GO/ObjCache.pm line 33. Compilation failed in require at GO/Handlers/obj.pm line 40. BEGIN failed--compilation aborted at GO/Handlers/obj.pm line 40. Compilation failed in require at GO/Parser.pm line 607. at GO/Model/Root.pm line 65 GO::Model::Root::throw('GO::Parser', 'No such module: GO::Handlers::obj;;\x{a}Can\'t locate GO/Model/DB...') called at GO/Parser.pm line 609 GO::Parser::load_module('GO::Parser', 'GO::Handlers::obj') called at GO/Parser.pm line 546 eval {...} called at GO/Parser.pm line 545 GO::Parser::new('GO::Parser', 'HASH(0x812ca44)') called at GO/Parser.pm line 592 GO::Parser::create_handler('GO::Parser', 'obj') called at GO/Parsers/base_parser.pm line 177 GO::Parsers::base_parser::parse_to_graph('GO::Parsers::go_ont_parser=HASH(0x845f5ec)', './t/data/test-function.dat') called at t/t140subgraph.t line 19 No such handler: obj at GO/Model/Root.pm line 65 GO::Model::Root::throw('GO::Parser=HASH(0x848a404)', 'No such handler: obj') called at GO/Parser.pm line 551 GO::Parser::new('GO::Parser', 'HASH(0x812ca44)') called at GO/Parser.pm line 592 GO::Parser::create_handler('GO::Parser', 'obj') called at GO/Parsers/base_parser.pm line 177 GO::Parsers::base_parser::parse_to_graph('GO::Parsers::go_ont_parser=HASH(0x845f5ec)', './t/data/test-function.dat') called at t/t140subgraph.t line 19 dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED test 1 Failed 1/1 tests, 0.00% okay t/t150xref..............Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at (eval 5) line 3. ...propagated at /home/david/cpantesting/perl-5.8.8/lib/5.8.8/base.pm line 85. BEGIN failed--compilation aborted at GO/ObjCache.pm line 33. Compilation failed in require at t/t150xref.t line 13. BEGIN failed--compilation aborted at t/t150xref.t line 13. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay t/t160logicaldef........Can't locate GO/Model/DB.pm in @INC (@INC contains: . /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/lib /home/david/_/_/perl-5.8.8/.cpan/build/go-perl-0.07_pre-5f1Dkl/blib/arch /home/david/cpantesting/perl-5.8.8/lib/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8/i686-linux /home/david/cpantesting/perl-5.8.8/lib/site_perl/5.8.8 /home/david/cpantesting/perl-5.8.8/lib/site_perl) at GO/ObjFactory.pm line 57. BEGIN failed--compilation aborted at GO/ObjFactory.pm line 57. Compilation failed in require at GO/Model/Graph.pm line 144. BEGIN failed--compilation aborted at GO/Model/Graph.pm line 144. Compilation failed in require at (eval 5) line 3. ...propagated at /home/david/cpantesting/perl-5.8.8/lib/5.8.8/base.pm line 85. BEGIN failed--compilation aborted at GO/ObjCache.pm line 33. Compilation failed in require at t/t160logicaldef.t line 14. BEGIN failed--compilation aborted at t/t160logicaldef.t line 14. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-5 Failed 5/5 tests, 0.00% okay t/t170chadoxml..........ok 9/9 skipped: various reasons t/t180ncbi_taxonomy.....ok Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/t010build.t 2 512 6 12 1-6 t/t020paths.t 2 512 7 14 1-7 t/t050oboformat.t 2 512 6 12 1-6 t/t070parseannot2obj.t 2 512 5 10 1-5 t/t110basic.t 2 512 4 8 1-4 t/t130relations.t 2 512 7 14 1-7 t/t140subgraph.t 2 512 1 2 1 t/t150xref.t 2 512 2 4 1-2 t/t160logicaldef.t 2 512 5 10 1-5 47 subtests skipped. Failed 9/15 test scripts. 43/101 subtests failed. Files=15, Tests=101, 5 wallclock secs ( 1.83 cusr + 0.17 csys = 2.00 CPU) Failed 9/15 test programs. 43/101 subtests failed. make: *** [test_dynamic] Error 255 -- Summary of my perl5 (revision 5 version 8 subversion 8) configuration: Platform: osname=linux, osvers=2.4.27-3-686, archname=i686-linux uname='linux pigsty 2.4.27-3-686 #1 tue dec 5 21:03:54 utc 2006 i686 gnulinux ' config_args='-de -Dprefix=/home/david/cpantesting/perl-5.8.8' hint=recommended, useposix=true, d_sigaction=define usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O2', cppflags='-fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='3.3.5 (Debian 1:3.3.5-13)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags =' -L/usr/local/lib' libpth=/usr/local/lib /lib /usr/lib libs=-lnsl -lgdbm -ldl -lm -lcrypt -lutil -lc perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc libc=/lib/libc-2.3.2.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='2.3.2' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E' cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
