This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear Erick Antezana, This is a computer-generated report for onto-perl-1.0 on perl-5.6.2, created automatically by CPAN-Reporter-1.04 and sent to the CPAN Testers mailing list. If you have received this email directly, it is because the person testing your distribution chose to send a copy to your CPAN email address; there may be a delay before the official report is received and processed by CPAN Testers. Thank you for uploading your work to CPAN. However, it appears that there were some problems with your distribution. If these results are not what you expect, please consult "Notes for CPAN Authors" on the CPAN Testers Wiki: http://cpantest.grango.org Sections of this report: * Tester comments * Program output * Prerequisites * Environment and other context ------------------------------ TESTER COMMENTS ------------------------------ Additional comments from tester: [none provided] ------------------------------ PROGRAM OUTPUT ------------------------------ Output from '/usr/bin/make test': PERL_DL_NONLAZY=1 /usr/local/bin/perl5.6.2 "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/CCO_ID...............ok t/CCO_ID_Set...........ok t/CCO_ID_Term_Map......ok t/Dbxref...............ok t/DbxrefSet............ok t/Def..................# Failed test 13 in t/Def.t at line 70 # t/Def.t line 70 is: ok($def2->dbxref_set_as_string() eq "[CCO:ea \"Erick Antezana\" {opt=first}, CCO:ls, CCO:vm]"); FAILED test 13 Failed 1/14 tests, 92.86% okay t/GoaAssociation.......ok t/GoaAssociationSet....ok t/GoaParser............Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) ok t/IDspace..............ok t/IntActParser.........Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Can't locate XML/Simple.pm in @INC (@INC contains: /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/arch /usr/local/src/CPAN/build/Crypt-SSLeay-0.57-gwbaO6/blib/arch /usr/local/src/CPAN/build/Crypt-SSLeay-0.57-gwbaO6/blib/lib /usr/local/src/CPAN/build/Test-Pod-1.26-XHP3mq/blib/arch /usr/local/src/CPAN/build/Test-Pod-1.26-XHP3mq/blib/lib /usr/local/src/CPAN/build/File-Find-Rule-0.30-CLAOPr/blib/arch /usr/local/src/CPAN/build/File-Find-Rule-0.30-CLAOPr/blib/lib /usr/local/src/CPAN/build/Number-Compare-0.01-4lOkh0/blib/arch /usr/local/src/CPAN/build/Number-Compare-0.01-4lOkh0/blib/lib /usr/local/src/CPAN/build/Test-Pod-Coverage-1.08-IY4Cvu/blib/arch /usr/local/src/CPAN/build/Test-Pod-Coverage-1.08-IY4Cvu/blib/lib /usr/local/src/CPAN/build/Module-CoreList-2.12-x1kKrJ/blib/arch /usr/local/src/CPAN/build/Module-CoreList-2.12-x1kKrJ/blib/lib /usr/local/src/CPAN/build/Pod-Coverage-0.19-4YHPHn/blib/arch /usr/local/src/CPAN/build/Pod-Coverage-0.19-4YHPHn/blib/lib /usr/local/src/CPAN/build/Devel-Symdump-2.08-rWPAQC/blib/arch /usr/local/src/CPAN/build/Devel-Symdump-2.08-rWPAQC/blib/lib /usr/local/src/CPAN/build/HTML-Element-Tiny-0.002-OhOPAe/blib/arch /usr/local/src/CPAN/build/HTML-Element-Tiny-0.002-OhOPAe/blib/lib /usr/local/src/CPAN/build/Test-Deep-0.099-0iagt7/blib/arch /usr/local/src/CPAN/build/Test-Deep-0.099-0iagt7/blib/lib /usr/local/src/CPAN/build/Test-NoWarnings-0.084-x8WPrQ/blib/arch /usr/local/src/CPAN/build/Test-NoWarnings-0.084-x8WPrQ/blib/lib /usr/local/src/CPAN/build/Test-Tester-0.106-nZWiT4/blib/arch /usr/local/src/CPAN/build/Test-Tester-0.106-nZWiT4/blib/lib /usr/perl5.6.2/lib/5.6.2/amd64-freebsd /usr/perl5.6.2/lib/5.6.2/amd64-freebsd /usr/perl5.6.2/lib/5.6.2 /usr/perl5.6.2/lib/site_perl/5.6.2/amd64-freebsd /usr/perl5.6.2/lib/site_perl/5.6.2/amd64-freebsd /usr/perl5.6.2/lib/site_perl/5.6.2 /usr/perl5.6.2/lib/site_perl/5.6.2/amd64-freebsd /usr/perl5.6.2/lib/site_perl/5.6.2 /usr/perl5.6.2/lib/site_perl . /usr/perl5.6.2/lib/5! .6.2/amd 64-freebsd /usr/perl5.6.2/lib/5.6.2 /usr/perl5.6.2/lib/site_perl/5.6.2/amd64-freebsd /usr/perl5.6.2/lib/site_perl/5.6.2 /usr/perl5.6.2/lib/site_perl .) at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Util/XMLIntactParser.pm line 12. BEGIN failed--compilation aborted at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Util/XMLIntactParser.pm line 12. Compilation failed in require at t/IntActParser.t line 15. BEGIN failed--compilation aborted at t/IntActParser.t line 15. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-7 Failed 7/7 tests, 0.00% okay t/NCBIParser...........Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) ok t/NewIntActParser......Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) ok 7/8 skipped: because XML::XPath is required for testing the IntAct parser t/OBOParser............Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) ok t/Ontology.............Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) # Failed test 50 in t/Ontology.t at line 186 # t/Ontology.t line 186 is: ok(($n1->synonym_as_string())[0] eq "\"Uno\" [CCO:ls, CCO:vm]"); FAILED test 50 Failed 1/180 tests, 99.44% okay t/Ontolome.............Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) # Failed test 15 in t/Ontolome.t at line 128 # t/Ontolome.t line 128 is: ok($onto4->get_number_of_relationships() == 4); # Failed test 57 in t/Ontolome.t at line 604 # t/Ontolome.t line 604 is: ok($go_go->get_number_of_relationships() == 17); FAILED tests 15, 57 Failed 2/58 tests, 96.55% okay t/OrthoMCLParser.......Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) ok t/OWLParser............Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2487, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2611, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) Bareword found where operator expected at /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i/blib/lib/CCO/Core/Ontology.pm line 2682, near "$file_handle char_hex_http" (Missing operator before char_hex_http?) ok t/Relationship.........ok t/RelationshipType.....# Failed test 23 in t/RelationshipType.t at line 115 # t/RelationshipType.t line 115 is: ok(($r2->synonym_as_string())[0] eq "\"part_of\" [CCO:ls, CCO:vm]"); # Failed test 24 in t/RelationshipType.t at line 117 # t/RelationshipType.t line 117 is: ok(($r2->synonym_as_string())[0] eq "\"part_of\" [CCO:ls, CCO:vm]"); # Failed test 25 in t/RelationshipType.t at line 118 # t/RelationshipType.t line 118 is: ok(($r2->synonym_as_string())[1] eq "\"part_of\" [CCO:ls2, CCO:vm2]"); FAILED tests 23-25 Failed 3/32 tests, 90.62% okay t/Set..................ok t/Synonym..............# Failed test 33 in t/Synonym.t at line 110 # t/Synonym.t line 110 is: ok($syn3->def_as_string() eq "\"This is a dummy synonym\" [CCO:ea \"Erick Antezana\", CCO:ls, CCO:vm]"); FAILED test 33 Failed 1/34 tests, 97.06% okay t/SynonymSet...........ok t/SynonymTypeDef.......ok t/SynonymTypeDefSet....ok t/Term.................# Failed test 45 in t/Term.t at line 139 # t/Term.t line 139 is: ok(($n2->synonym_as_string())[0] eq "\"Hola mundo2\" [CCO:ls, CCO:vm]"); # Failed test 46 in t/Term.t at line 141 # t/Term.t line 141 is: ok(($n2->synonym_as_string())[0] eq "\"Hola mundo2\" [CCO:ls, CCO:vm]"); # Failed test 47 in t/Term.t at line 142 # t/Term.t line 142 is: ok(($n2->synonym_as_string())[1] eq "\"Hello world2\" [CCO:ls2, CCO:vm2]"); FAILED tests 45-47 Failed 3/66 tests, 95.45% okay t/TermSet..............ok t/UniProtParser........ok 12/12 skipped: because SWISS::Entry is required for testing the UniProt parser Failed 7/28 test scripts, 75.00% okay. 18/733 subtests failed, 97.54% okay. Failed Test Stat Wstat Total Fail Failed List of Failed ------------------------------------------------------------------------------- t/Def.t 14 1 7.14% 13 t/IntActParser.t 2 512 7 14 200.00% 1-7 t/Ontology.t 180 1 0.56% 50 t/Ontolome.t 58 2 3.45% 15 57 t/RelationshipType.t 32 3 9.38% 23-25 t/Synonym.t 34 1 2.94% 33 t/Term.t 66 3 4.55% 45-47 19 subtests skipped. *** Error code 35 Stop in /mnt/i386/usr/local/src/CPAN/build/onto-perl-1.0-4zrq8i. ------------------------------ PREREQUISITES ------------------------------ Prerequisite modules loaded: No requirements found ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: LC_ALL = de_DE.ISO8859-1 LC_CTYPE = de_DE.ISO8859-1 PATH = /usr/X11R6/bin:/usr/X11/bin:/usr/local/bin:/usr/bin:/bin:/usr/gnu/bin:/usr/TeX/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/pilot/bin:/home/e/eserte/bin/FreeBSD:/home/e/eserte/bin/sh:/home/e/eserte/bin:/usr/X386/bin:/usr/games:/home/e/eserte/devel PERL5LIB = /usr/local/src/CPAN/build/Crypt-SSLeay-0.57-gwbaO6/blib/arch:/usr/local/src/CPAN/build/Crypt-SSLeay-0.57-gwbaO6/blib/lib:/usr/local/src/CPAN/build/Test-Pod-1.26-XHP3mq/blib/arch:/usr/local/src/CPAN/build/Test-Pod-1.26-XHP3mq/blib/lib:/usr/local/src/CPAN/build/File-Find-Rule-0.30-CLAOPr/blib/arch:/usr/local/src/CPAN/build/File-Find-Rule-0.30-CLAOPr/blib/lib:/usr/local/src/CPAN/build/Number-Compare-0.01-4lOkh0/blib/arch:/usr/local/src/CPAN/build/Number-Compare-0.01-4lOkh0/blib/lib:/usr/local/src/CPAN/build/Test-Pod-Coverage-1.08-IY4Cvu/blib/arch:/usr/local/src/CPAN/build/Test-Pod-Coverage-1.08-IY4Cvu/blib/lib:/usr/local/src/CPAN/build/Module-CoreList-2.12-x1kKrJ/blib/arch:/usr/local/src/CPAN/build/Module-CoreList-2.12-x1kKrJ/blib/lib:/usr/local/src/CPAN/build/Pod-Coverage-0.19-4YHPHn/blib/arch:/usr/local/src/CPAN/build/Pod-Coverage-0.19-4YHPHn/blib/lib:/usr/local/src/CPAN/build/Devel-Symdump-2.08-rWPAQC/blib/arch:/usr/local/src/CPAN/build/Devel-Symdump-2.08-rWPAQC/blib/lib:/usr/local/src/CPAN/build/HTML-Element-Tiny-0.002-OhOPAe/blib/arch:/usr/local/src/CPAN/build/HTML-Element-Tiny-0.002-OhOPAe/blib/lib:/usr/local/src/CPAN/build/Test-Deep-0.099-0iagt7/blib/arch:/usr/local/src/CPAN/build/Test-Deep-0.099-0iagt7/blib/lib:/usr/local/src/CPAN/build/Test-NoWarnings-0.084-x8WPrQ/blib/arch:/usr/local/src/CPAN/build/Test-NoWarnings-0.084-x8WPrQ/blib/lib:/usr/local/src/CPAN/build/Test-Tester-0.106-nZWiT4/blib/arch:/usr/local/src/CPAN/build/Test-Tester-0.106-nZWiT4/blib/lib PERL5_CPANPLUS_IS_RUNNING = 5353 PERL5_CPAN_IS_RUNNING = 5353 PERL_HTML_DISPLAY_CLASS = HTML::Display::Mozilla SHELL = /bin/tcsh STDPERL = perl TERM = xterm Perl special variables (and OS-specific diagnostics, for MSWin32): $^X = perl5.6.2 $UID/$EUID = 1000 / 1000 $GID = 1000 1024 0 1000 1000 $EGID = 1000 1024 0 1000 1000 Perl module toolchain versions installed: Module Have ------------------- ------- CPAN 1.92_51 Cwd 2.04 ExtUtils::CBuilder n/a ExtUtils::Command 1.13 ExtUtils::Install 1.41 ExtUtils::MakeMaker 6.36 ExtUtils::Manifest 1.51 ExtUtils::ParseXS n/a File::Spec 0.86 Module::Build 0.2808 Module::Signature n/a Test::Harness 2.30 Test::More 0.72 YAML n/a YAML::Syck n/a version n/a -- Summary of my perl5 (revision 5.0 version 6 subversion 2) configuration: Platform: osname=freebsd, osvers=6.2-release, archname=amd64-freebsd uname='freebsd biokovo-amd64.herceg.de 6.2-release freebsd 6.2-release #0: fri jan 12 08:32:24 utc 2007 [EMAIL PROTECTED]:usrobjusrsrcsysgeneric amd64 ' config_args='-Dprefix=/usr/perl5.6.2 -D cc=ccache cc -Dgccansipedantic -de' hint=recommended, useposix=true, d_sigaction=define usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef useperlio=undef d_sfio=undef uselargefiles=define usesocks=undef use64bitint=define use64bitall=define uselongdouble=undef Compiler: cc='ccache cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -I/usr/local/include', optimize='-O2 -pipe', cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -I/usr/local/include' ccversion='', gccversion='3.4.6 [FreeBSD] 20060305', gccosandvers='' intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16 ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=8, usemymalloc=n, prototype=define Linker and Libraries: ld='ccache cc', ldflags ='-Wl,-E -L/usr/local/lib' libpth=/usr/lib /usr/local/lib libs=-lgdbm -lm -lc -lcrypt -lutil perllibs=-lm -lc -lcrypt -lutil libc=, so=so, useshrplib=false, libperl=libperl.a Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' ' cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib'
