This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear EASR, This is a computer-generated error report created automatically by CPANPLUS, version 0.82. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Tue Nov 20 01:51:36 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/onto-perl-1.02.tar.gz' [MSG] [Tue Nov 20 01:51:40 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/CHECKSUMS' [MSG] [Tue Nov 20 01:51:41 2007] Checksum matches for 'onto-perl-1.02.tar.gz' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/ulo_cco.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_g_dummy.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/test_orthomcl.dat' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/pre_cco.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/nodes_dummy.dmp' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_i_At.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/out_I_A_thaliana.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/goa_assoc.txt' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_b.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_g.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_o.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/goa_assoc_filt.txt' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_u.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/Ath_cc_up.map' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/arath_small-05.xml' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_b_sce.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/out_cco.obo.old' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/names_dummy.dmp' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/test_ulo_cco2.owl' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/Ath_up.map' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/arath_small-07.xml' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/out_omcl.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_id_term.map' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/pre_cco_core.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_b_hsa.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_b_ath.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/up_test.txt' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/alpha.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_t.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/fake_ulo_cco.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/out_cco_up.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/out_cco.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/header.obo' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/data/cco_i.ids' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/SynonymSet.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/GoaAssociation.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/OBOParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Ontology.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/NCBIParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/OWLParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/TermSet.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/CCO_ID_Set.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/GoaAssociationSet.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Def.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/CCO_ID.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Synonym.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/RelationshipType.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/SynonymTypeDef.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/UniProtParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Set.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/IntActParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/NewIntActParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/OrthoMCLParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/CCO_ID_Term_Map.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/GoaParser.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Dbxref.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/SynonymTypeDefSet.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/IDspace.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/DbxrefSet.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Term.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Relationship.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/t/Ontolome.t' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/DbxrefSet.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/ObjectIdSet.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/Set.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/XMLIntactParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/CCO_ID_Set.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/CCO_ID_Term_Map.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/SynonymTypeDefSet.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/CCO_ID.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/Ontolome.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/SynonymSet.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/TermSet.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/GoaAssociationSet.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Util/ObjectSet.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/GoaAssociation.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Synonym.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Def.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Interaction.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Relationship.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/SynonymTypeDef.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Term.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Dbxref.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/IDspace.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/RelationshipType.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Ontology.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Core/Interactor.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/UniProtParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/NCBIParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/InteractionManager.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/OrthoMCLParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/IntActParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/OBOParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/OWLParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/GoaParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/CCO/Parser/NewIntActParser.pm' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/Changes' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/MANIFEST' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/scripts/' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/scripts/term_id_vs_term_def.pl' [MSG] [Tue Nov 20 01:51:42 2007] Extracted 'onto-perl-1.02/scripts/names.xsl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/get_descendent_terms.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/owl2obo.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/obo2cco.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/obsolete_term_id_vs_name_in_go.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/xml2html.xsl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/obsolete_term_id_vs_def_in_go.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/obo2xml.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/term_id_vs_term_name.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/obo2owl.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/go2owl.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/scripts/get_ancestor_terms.pl' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/LICENSE' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/README' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/META.yml' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/onto-perl.pod' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/INSTALL' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto-perl-1.02/Makefile.PL' [MSG] [Tue Nov 20 01:51:43 2007] Extracted 'onto::perl' to '/home/cpan/perl562/.cpanplus/5.6.2/build/onto-perl-1.02' [MSG] [Tue Nov 20 01:51:43 2007] XML::XPath is missing. This module is only required in order to perform parsing operations with IntAct-XML files. However, this module is not required for using onto-perl. If you do not intend to use IntAct XML files, then you may continue, and install XML::XPath in the future. SWISS::Entry is missing. This module is only required in order to perform parsing operations with UniProt files. However, this module is not required for using onto-perl. If you do not intend to use UniProt files, then you may continue, and install SWISS::Entry in the future. XML::Parser is missing. This module is only required in order to perform parsing operations with XML files (obo2owl). However, this module is not fully required for using onto-perl. If you do not intend to convert your files to OWL, then you may continue, and install XML::Parser in the future. Checking if your kit is complete... Looks good Writing Makefile for CCO [MSG] [Tue Nov 20 01:51:43 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Tue Nov 20 01:51:49 2007] cp CCO/Parser/GoaParser.pm blib/lib/CCO/Parser/GoaParser.pm cp CCO/Core/IDspace.pm blib/lib/CCO/Core/IDspace.pm cp CCO/Util/ObjectIdSet.pm blib/lib/CCO/Util/ObjectIdSet.pm cp CCO/Util/TermSet.pm blib/lib/CCO/Util/TermSet.pm cp CCO/Core/Interaction.pm blib/lib/CCO/Core/Interaction.pm cp CCO/Core/Ontology.pm blib/lib/CCO/Core/Ontology.pm cp CCO/Core/Interactor.pm blib/lib/CCO/Core/Interactor.pm cp CCO/Util/GoaAssociationSet.pm blib/lib/CCO/Util/GoaAssociationSet.pm cp CCO/Util/CCO_ID_Set.pm blib/lib/CCO/Util/CCO_ID_Set.pm cp CCO/Parser/IntActParser.pm blib/lib/CCO/Parser/IntActParser.pm cp CCO/Core/Term.pm blib/lib/CCO/Core/Term.pm cp CCO/Core/Dbxref.pm blib/lib/CCO/Core/Dbxref.pm cp onto-perl.pod blib/lib/onto-perl.pod cp CCO/Util/SynonymSet.pm blib/lib/CCO/Util/SynonymSet.pm cp CCO/Util/DbxrefSet.pm blib/lib/CCO/Util/DbxrefSet.pm cp CCO/Parser/NewIntActParser.pm blib/lib/CCO/Parser/NewIntActParser.pm cp CCO/Util/CCO_ID_Term_Map.pm blib/lib/CCO/Util/CCO_ID_Term_Map.pm cp CCO/Core/Relationship.pm blib/lib/CCO/Core/Relationship.pm cp CCO/Parser/OBOParser.pm blib/lib/CCO/Parser/OBOParser.pm cp CCO/Util/Ontolome.pm blib/lib/CCO/Util/Ontolome.pm cp CCO/Parser/OrthoMCLParser.pm blib/lib/CCO/Parser/OrthoMCLParser.pm cp CCO/Parser/UniProtParser.pm blib/lib/CCO/Parser/UniProtParser.pm cp CCO/Util/XMLIntactParser.pm blib/lib/CCO/Util/XMLIntactParser.pm cp CCO/Util/CCO_ID.pm blib/lib/CCO/Util/CCO_ID.pm cp CCO/Parser/OWLParser.pm blib/lib/CCO/Parser/OWLParser.pm cp CCO/Core/RelationshipType.pm blib/lib/CCO/Core/RelationshipType.pm cp CCO/Parser/NCBIParser.pm blib/lib/CCO/Parser/NCBIParser.pm cp CCO/Util/ObjectSet.pm blib/lib/CCO/Util/ObjectSet.pm cp CCO/Core/SynonymTypeDef.pm blib/lib/CCO/Core/SynonymTypeDef.pm cp CCO/Core/GoaAssociation.pm blib/lib/CCO/Core/GoaAssociation.pm cp CCO/Util/Set.pm blib/lib/CCO/Util/Set.pm cp CCO/Core/Synonym.pm blib/lib/CCO/Core/Synonym.pm cp CCO/Util/SynonymTypeDefSet.pm blib/lib/CCO/Util/SynonymTypeDefSet.pm cp CCO/Parser/InteractionManager.pm blib/lib/CCO/Parser/InteractionManager.pm cp CCO/Core/Def.pm blib/lib/CCO/Core/Def.pm cp scripts/go2owl.pl blib/script/go2owl.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/go2owl.pl cp scripts/obo2cco.pl blib/script/obo2cco.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obo2cco.pl cp scripts/obo2owl.pl blib/script/obo2owl.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obo2owl.pl cp scripts/get_ancestor_terms.pl blib/script/get_ancestor_terms.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/get_ancestor_terms.pl cp scripts/term_id_vs_term_def.pl blib/script/term_id_vs_term_def.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/term_id_vs_term_def.pl cp scripts/term_id_vs_term_name.pl blib/script/term_id_vs_term_name.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/term_id_vs_term_name.pl cp scripts/obo2xml.pl blib/script/obo2xml.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obo2xml.pl cp scripts/obsolete_term_id_vs_def_in_go.pl blib/script/obsolete_term_id_vs_def_in_go.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obsolete_term_id_vs_def_in_go.pl cp scripts/obsolete_term_id_vs_name_in_go.pl blib/script/obsolete_term_id_vs_name_in_go.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obsolete_term_id_vs_name_in_go.pl cp scripts/owl2obo.pl blib/script/owl2obo.pl /home/cpan/perl562/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/owl2obo.pl Manifying blib/man1/go2owl.pl.1 Manifying blib/man1/obsolete_term_id_vs_def_in_go.pl.1 Manifying blib/man1/obsolete_term_id_vs_name_in_go.pl.1 Manifying blib/man1/owl2obo.pl.1 Manifying blib/man1/obo2owl.pl.1 Manifying blib/man1/get_ancestor_terms.pl.1 Manifying blib/man3/CCO::Parser::GoaParser.3 Manifying blib/man3/CCO::Core::IDspace.3 Manifying blib/man3/CCO::Util::TermSet.3 Manifying blib/man3/CCO::Util::ObjectIdSet.3 Manifying blib/man3/CCO::Core::Ontology.3 Manifying blib/man3/CCO::Core::Interaction.3 Manifying blib/man3/CCO::Util::GoaAssociationSet.3 Manifying blib/man3/CCO::Core::Interactor.3 Manifying blib/man3/CCO::Util::CCO_ID_Set.3 Manifying blib/man3/CCO::Parser::IntActParser.3 Manifying blib/man3/CCO::Core::Dbxref.3 Manifying blib/man3/CCO::Core::Term.3 Manifying blib/man3/onto-perl.3 Manifying blib/man3/CCO::Util::SynonymSet.3 Manifying blib/man3/CCO::Util::DbxrefSet.3 Manifying blib/man3/CCO::Parser::NewIntActParser.3 Manifying blib/man3/CCO::Util::CCO_ID_Term_Map.3 Manifying blib/man3/CCO::Parser::OBOParser.3 Manifying blib/man3/CCO::Core::Relationship.3 Manifying blib/man3/CCO::Util::Ontolome.3 Manifying blib/man3/CCO::Parser::OrthoMCLParser.3 Manifying blib/man3/CCO::Parser::UniProtParser.3 Manifying blib/man3/CCO::Util::XMLIntactParser.3 Manifying blib/man3/CCO::Util::CCO_ID.3 Manifying blib/man3/CCO::Parser::OWLParser.3 Manifying blib/man3/CCO::Core::RelationshipType.3 Manifying blib/man3/CCO::Parser::NCBIParser.3 Manifying blib/man3/CCO::Util::ObjectSet.3 Manifying blib/man3/CCO::Core::SynonymTypeDef.3 Manifying blib/man3/CCO::Core::GoaAssociation.3 Manifying blib/man3/CCO::Util::Set.3 Manifying blib/man3/CCO::Core::Synonym.3 Manifying blib/man3/CCO::Util::SynonymTypeDefSet.3 Manifying blib/man3/CCO::Parser::InteractionManager.3 Manifying blib/man3/CCO::Core::Def.3 [ERROR] [Tue Nov 20 01:52:08 2007] MAKE TEST failed: PERL_DL_NONLAZY=1 /home/cpan/perl562/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/CCO_ID...............ok t/CCO_ID_Set...........ok t/CCO_ID_Term_Map......ok t/Dbxref...............ok t/DbxrefSet............ok t/Def..................# Failed test 13 in t/Def.t at line 70 # t/Def.t line 70 is: ok($def2->dbxref_set_as_string() eq "[CCO:ea \"Erick Antezana\" {opt=first}, CCO:ls, CCO:vm]" FAILED test 13 Failed 1/14 tests, 92.86% okay t/GoaAssociation.......ok t/GoaAssociationSet....ok t/GoaParser............ok t/IDspace..............ok t/IntActParser.........ok 6/7 skipped: various reasons t/NCBIParser...........ok t/NewIntActParser......ok 7/8 skipped: various reasons t/OBOParser............ok t/Ontology.............ok t/Ontolome.............# Failed test 57 in t/Ontolome.t at line 604 # t/Ontolome.t line 604 is: ok($go_go->get_number_of_relationships() >= 17); # diff. arch: '>=' FAILED test 57 Failed 1/58 tests, 98.28% okay t/OrthoMCLParser.......ok t/OWLParser............ok 6/6 skipped: various reasons t/Relationship.........ok t/RelationshipType.....ok t/Set..................ok t/Synonym..............ok t/SynonymSet...........ok t/SynonymTypeDef.......ok t/SynonymTypeDefSet....ok t/Term.................ok t/TermSet..............ok t/UniProtParser........ok 12/12 skipped: various reasons Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/Def.t 14 1 13 t/Ontolome.t 58 1 57 31 subtests skipped. Failed 2/28 test scripts. 2/742 subtests failed. Files=28, Tests=742, 18 wallclock secs (16.95 cusr + 0.86 csys = 17.81 CPU) Failed 2/28 test programs. 2/742 subtests failed. gmake: [MSG] [Tue Nov 20 01:52:08 2007] DEFAULT 'proceed_on_test_failure' HANDLER RETURNING 'sub return value' ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: AUTOMATED_TESTING = 1 PATH = /home/cpan/bin:/bin:/sbin:/usr/bin:/usr/sbin:/usr/X11R6/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/bin:/usr/local/sbin PERL5LIB = :/home/cpan/perl562/.cpanplus/5.6.2/build/onto-perl-1.02/blib/lib:/home/cpan/perl562/.cpanplus/5.6.2/build/onto-perl-1.02/blib/arch:/home/cpan/perl562/.cpanplus/5.6.2/build/onto-perl-1.02/blib PERL5_CPANPLUS_IS_EXECUTING = PERL5_CPANPLUS_IS_RUNNING = 10258 PERL5_CPANPLUS_IS_VERSION = 0.82 PERL_MM_USE_DEFAULT = 1 SHELL = /usr/pkg/bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /home/cpan/perl562/bin/perl UID: $< = 1002 EUID: $> = 1002 GID: $( = 100 100 EGID: $) = 100 100 ------------------------------- -- Summary of my perl5 (revision 5.0 version 6 subversion 2) configuration: Platform: osname=netbsd, osvers=3.1, archname=i386-netbsd-thread-multi-64int uname='netbsd canker.bingosnet.co.uk 3.1 netbsd 3.1 (generic_laptop) #0: tue oct 31 04:32:05 utc 2006 [EMAIL PROTECTED]:homebuildsabnetbsd-3-1-releasei386200610302053z-objhomebuildsabnetbsd-3-1-releasesrcsysarchi386compilegeneric_laptop i386 ' config_args='' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=undef d_sfio=undef uselargefiles=define usesocks=undef use64bitint=define use64bitall=undef uselongdouble=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -I/usr/pkg/include', optimize='-O', cppflags='-fno-strict-aliasing -I/usr/pkg/include' ccversion='', gccversion='3.3.3 (NetBSD nb3 20040520)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, usemymalloc=n, prototype=define Linker and Libraries: ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib -L/usr/pkg/lib' libpth=/usr/pkg/lib /lib /usr/lib libs=-lgdbm -lm -lc -lposix -lcrypt -lutil -lpthread perllibs=-lm -lc -lposix -lcrypt -lutil -lpthread libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E ' cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared -L/usr/pkg/lib'
