This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear Gavin Sherlock, This is a computer-generated report for GO-TermFinder-0.8 on perl-5.6.2, created automatically by CPAN-Reporter-1.0601 and sent to the CPAN Testers mailing list. If you have received this email directly, it is because the person testing your distribution chose to send a copy to your CPAN email address; there may be a delay before the official report is received and processed by CPAN Testers. Thank you for uploading your work to CPAN. However, it appears that there were some problems with your distribution. If these results are not what you expect or if you would like to learn how to avoid FAIL reports for missing dependencies, unsupported operating systems, etc., please consult "Notes for CPAN Authors" on the CPAN Testers Wiki: http://cpantest.grango.org Sections of this report: * Tester comments * Program output * Prerequisites * Environment and other context ------------------------------ TESTER COMMENTS ------------------------------ Additional comments from tester: [none provided] ------------------------------ PROGRAM OUTPUT ------------------------------ Output from '/usr/bin/make test': make[1]: Entering directory `/home/david/_/_/perl-5.6.2/.cpan/build/GO-TermFinder-0.8-FLVWmb/native' make[1]: Leaving directory `/home/david/_/_/perl-5.6.2/.cpan/build/GO-TermFinder-0.8-FLVWmb/native' PERL_DL_NONLAZY=1 /home/david/cpantesting/perl-5.6.2/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/GO-AnnotatedGene..........................ok t/GO-AnnotationProvider-AnnotationParser....ok t/GO-Node...................................ok t/GO-OntologyProvider-OboParser.............ok t/GO-TermFinder-Native......................# Test 13 got: '0.238095238095238' (t/GO-TermFinder-Native.t at line 94) # Expected: '0.238095238095237' # t/GO-TermFinder-Native.t line 94 is: ok($probability, $d->hypergeometric($x, $n, $M, $N)); FAILED test 13 Failed 1/15 tests, 93.33% okay t/GO-TermFinder-Obo.........................# Test 7981 got: 'Uncaught exception from user code: None of the genes provided for analysis are found in the background population. GO::TermFinder::__checkAndStoreFindTermsArgs('GO::TermFinder=HASH(0xf456898)', 'genes', 'ARRAY(0xed65550)') called at /home/david/_/_/perl-5.6.2/.cpan/build/GO-TermFinder-0.8-FLVWmb/blib/lib/GO/TermFinder.pm line 635 GO::TermFinder::findTerms('GO::TermFinder=HASH(0xf456898)', 'genes', 'ARRAY(0xed65550)') called at t/GO-TermFinder-Obo.t line 507 eval {...} called at t/GO-TermFinder-Obo.t line 505 ' (t/GO-TermFinder-Obo.t at line 514) # Expected: 'None of the genes provided for analysis are found in the background population. ' (should die if genes not in background) # t/GO-TermFinder-Obo.t line 514 is: ok($@, "None of the genes provided for analysis are found in the background population.\n", "should die if genes not in background"); FAILED test 7981 Failed 1/7991 tests, 99.99% okay t/pod-coverage..............................Use of uninitialized value in eval "string" at t/pod-coverage.t line 9 (#1) (W uninitialized) An undefined value was used as if it were already defined. It was interpreted as a "" or a 0, but maybe it was a mistake. To suppress this warning assign a defined value to your variables. To help you figure out what was undefined, perl tells you what operation you used the undefined value in. Note, however, that perl optimizes your program and the operation displayed in the warning may not necessarily appear literally in your program. For example, "that $foo" is usually optimized into "that " . $foo, and the warning will refer to the concatenation (.) operator, even though there is no . in your program. ok t/pod.......................................Use of uninitialized value in eval "string" at t/pod.t line 16 (#1) (W uninitialized) An undefined value was used as if it were already defined. It was interpreted as a "" or a 0, but maybe it was a mistake. To suppress this warning assign a defined value to your variables. To help you figure out what was undefined, perl tells you what operation you used the undefined value in. Note, however, that perl optimizes your program and the operation displayed in the warning may not necessarily appear literally in your program. For example, "that $foo" is usually optimized into "that " . $foo, and the warning will refer to the concatenation (.) operator, even though there is no . in your program. ok t/strict....................................Can't locate Test/Strict.pm in @INC (@INC contains: /home/david/_/_/perl-5.6.2/.cpan/build/GO-TermFinder-0.8-FLVWmb/blib/lib /home/david/_/_/perl-5.6.2/.cpan/build/GO-TermFinder-0.8-FLVWmb/blib/arch /home/david/cpantesting/perl-5.6.2/lib/5.6.2/i686-linux /home/david/cpantesting/perl-5.6.2/lib/5.6.2/i686-linux /home/david/cpantesting/perl-5.6.2/lib/5.6.2 /home/david/cpantesting/perl-5.6.2/lib/site_perl/5.6.2/i686-linux /home/david/cpantesting/perl-5.6.2/lib/site_perl/5.6.2/i686-linux /home/david/cpantesting/perl-5.6.2/lib/site_perl/5.6.2 /home/david/cpantesting/perl-5.6.2/lib/site_perl/5.6.2/i686-linux /home/david/cpantesting/perl-5.6.2/lib/site_perl/5.6.2 /home/david/cpantesting/perl-5.6.2/lib/site_perl . /home/david/cpantesting/perl-5.6.2/lib/5.6.2/i686-linux /home/david/cpantesting/perl-5.6.2/lib/5.6.2 /home/david/cpantesting/perl-5.6.2/lib/site_perl/5.6.2/i686-linux /home/david/cpantesting/perl-5.6.2/lib/site_perl/5.6.2 /home/david/cpantesting/perl-5.6.2/lib/site_perl .) at t/strict.t line 18. BEGIN failed--compilation aborted at t/strict.t line 18. dubious Test returned status 2 (wstat 512, 0x200) Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/GO-TermFinder-Native.t 15 1 13 t/GO-TermFinder-Obo.t 7991 1 7981 t/strict.t 2 512 ?? ?? ?? Failed 3/9 test scripts. 2/8168 subtests failed. Files=9, Tests=8168, 45 wallclock secs (34.69 cusr + 0.46 csys = 35.15 CPU) Failed 3/9 test programs. 2/8168 subtests failed. make: *** [test_dynamic] Error 11 ------------------------------ PREREQUISITES ------------------------------ Prerequisite modules loaded: requires: Module Need Have ---------- -------- ----- CGI 0 2.752 GD 0 2.35 GraphViz 0 2.03 Storable 1.0.1.12 2.18 Test::More 0 0.70 ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: LANG = en_GB LANGUAGE = en_GB:en_US:en_GB:en PATH = /usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games PERL5LIB = PERL5_CPANPLUS_IS_RUNNING = 22646 PERL5_CPAN_IS_RUNNING = 22646 SHELL = /bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): $^X = /home/david/cpantesting/perl-5.6.2/bin/perl $UID/$EUID = 1000 / 1000 $GID = 1000 46 44 29 25 24 20 1000 $EGID = 1000 46 44 29 25 24 20 1000 Perl module toolchain versions installed: Module Have ------------------- ------ CPAN 1.9205 Cwd 3.24 ExtUtils::CBuilder n/a ExtUtils::Command 1.13 ExtUtils::Install 1.41 ExtUtils::MakeMaker 6.36 ExtUtils::Manifest 1.51 ExtUtils::ParseXS n/a File::Spec 3.24 Module::Build 0.2808 Module::Signature n/a Test::Harness 2.64 Test::More 0.70 YAML n/a YAML::Syck n/a version 0.7203 -- Summary of my perl5 (revision 5.0 version 6 subversion 2) configuration: Platform: osname=linux, osvers=2.4.27-3-686, archname=i686-linux uname='linux pigsty 2.4.27-3-686 #1 tue dec 5 21:03:54 utc 2006 i686 gnulinux ' config_args='-Dprefix=/home/david/cpantesting/perl-5.6.2 -de' hint=recommended, useposix=true, d_sigaction=define usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef useperlio=undef d_sfio=undef uselargefiles=define usesocks=undef use64bitint=undef use64bitall=undef uselongdouble=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-O3', cppflags='-fno-strict-aliasing' ccversion='', gccversion='3.3.5 (Debian 1:3.3.5-13)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, usemymalloc=n, prototype=define Linker and Libraries: ld='cc', ldflags =' -L/usr/local/lib' libpth=/usr/local/lib /lib /usr/lib libs=-lnsl -lgdbm -ldl -lm -lc -lcrypt -lutil perllibs=-lnsl -ldl -lm -lc -lcrypt -lutil libc=/lib/libc-2.3.2.so, so=so, useshrplib=false, libperl=libperl.a Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic' cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
