[
https://issues.apache.org/jira/browse/CTAKES-63?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13461843#comment-13461843
]
Pei Chen commented on CTAKES-63:
--------------------------------
Could recreate this in ctakes v2.5 Cas visual debugger with the standard
AggregatePlainTextPipeline.
Example Text to recreate:
“From: Chen, Pei [mailto:[email protected]] Sent: Wednesday, February 27, 2008
12:55 PMTo: Chen, Pei M.,M.D.Subject: RE: blah blah blah”
Full Exception:
Exception:
2012-09-21 12:48:36,789 INFO
edu.mayo.bmi.uima.lookup.ae.UmlsDictionaryLookupAnnotator - process(JCas)
org.apache.lucene.queryParser.ParseException: Cannot parse 'mailto:abcoman@t
nec.org]': Lexical error at line 1, column 26. Encountered: <EOF> after : ""
at org.apache.lucene.queryParser.QueryParser.parse(QueryParser.java:192)
at
edu.mayo.bmi.dictionary.lucene.LuceneDictionaryImpl.getEntries(LuceneDictionaryImpl.java:106)
at
edu.mayo.bmi.dictionary.DictionaryEngine.metaLookup(DictionaryEngine.java:181)
at
edu.mayo.bmi.lookup.algorithms.FirstTokenPermutationImpl.getFirstTokenHits(FirstTokenPermutationImpl.java:701)
at
edu.mayo.bmi.lookup.algorithms.FirstTokenPermutationImpl.lookup(FirstTokenPermutationImpl.java:145)
at
edu.mayo.bmi.uima.lookup.ae.DictionaryLookupAnnotator.performLookup(DictionaryLookupAnnotator.java:155)
at
edu.mayo.bmi.uima.lookup.ae.DictionaryLookupAnnotator.process(DictionaryLookupAnnotator.java:131)
at
org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:409)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267)
at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
at org.apache.uima.tools.cvd.MainFrame.internalRunAE(MainFrame.java:1526)
at org.apache.uima.tools.cvd.MainFrame.runAE(MainFrame.java:430)
at
org.apache.uima.tools.cvd.control.AnnotatorRerunEventHandler.actionPerformed(AnnotatorRerunEventHandler.java:40)
at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
at javax.swing.AbstractButton.doClick(Unknown Source)
at javax.swing.AbstractButton.doClick(Unknown Source)
at
javax.swing.plaf.basic.BasicMenuItemUI$Actions.actionPerformed(Unknown Source)
at javax.swing.SwingUtilities.notifyAction(Unknown Source)
at javax.swing.JComponent.processKeyBinding(Unknown Source)
at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown
Source)
at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown
Source)
at javax.swing.JMenuBar.processBindingForKeyStrokeRecursive(Unknown
Source)
at javax.swing.JMenuBar.processKeyBinding(Unknown Source)
at javax.swing.KeyboardManager.fireBinding(Unknown Source)
at javax.swing.KeyboardManager.fireKeyboardAction(Unknown Source)
at javax.swing.JComponent.processKeyBindingsForAllComponents(Unknown
Source)
at javax.swing.JComponent.processKeyBindings(Unknown Source)
at javax.swing.JComponent.processKeyEvent(Unknown Source)
at java.awt.Component.processEvent(Unknown Source)
at java.awt.Container.processEvent(Unknown Source)
at java.awt.Component.dispatchEventImpl(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.KeyboardFocusManager.redispatchEvent(Unknown Source)
at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(Unknown Source)
at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(Unknown
Source)
at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(Unknown
Source)
at java.awt.DefaultKeyboardFocusManager.dispatchEvent(Unknown Source)
at java.awt.Component.dispatchEventImpl(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Window.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
at java.awt.EventQueue.access$000(Unknown Source)
at java.awt.EventQueue$1.run(Unknown Source)
at java.awt.EventQueue$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
Source)
at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
Source)
at java.awt.EventQueue$2.run(Unknown Source)
at java.awt.EventQueue$2.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown
Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: org.apache.lucene.queryParser.TokenMgrError: Lexical error at line
1, column 26. Encountered: <EOF> after : ""
at
org.apache.lucene.queryParser.QueryParserTokenManager.getNextToken(QueryParserTokenManager.java:1229)
at
org.apache.lucene.queryParser.QueryParser.jj_scan_token(QueryParser.java:1650)
at
org.apache.lucene.queryParser.QueryParser.jj_3R_2(QueryParser.java:1533)
at
org.apache.lucene.queryParser.QueryParser.jj_3_1(QueryParser.java:1540)
at
org.apache.lucene.queryParser.QueryParser.jj_2_1(QueryParser.java:1526)
at
org.apache.lucene.queryParser.QueryParser.Clause(QueryParser.java:1221)
at org.apache.lucene.queryParser.QueryParser.Query(QueryParser.java:1207)
at
org.apache.lucene.queryParser.QueryParser.TopLevelQuery(QueryParser.java:1167)
at org.apache.lucene.queryParser.QueryParser.parse(QueryParser.java:182)
... 67 more
> exception formed by malformed email address
> -------------------------------------------
>
> Key: CTAKES-63
> URL: https://issues.apache.org/jira/browse/CTAKES-63
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-dictionary-lookup
> Affects Versions: 2.6-incubating
> Environment: windows
> Reporter: Chen Lin
> Priority: Critical
> Labels: Stability
>
> 2012-09-21 12:48:36,789 INFO
> edu.mayo.bmi.uima.lookup.ae.UmlsDictionaryLookupAnnotator - process(JCas)
> org.apache.lucene.queryParser.ParseException: Cannot parse 'mailto:abcoman@t
> nec.org]': Lexical error at line 1, column 26. Encountered: <EOF> after : ""
> at
> org.apache.lucene.queryParser.QueryParser.parse(QueryParser.java:192)
> at
> edu.mayo.bmi.dictionary.lucene.LuceneDictionaryImpl.getEntries(LuceneDictionaryImpl.java:106)
> at
> edu.mayo.bmi.dictionary.DictionaryEngine.metaLookup(DictionaryEngine.java:181)
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