Here's what I did to test the clinical-pipeline aggregates after checking out source from 3.0.0-incubating branch into Eclipse
- download resources from sourceforge.net per README http://svn.apache.org/viewvc/incubator/ctakes/branches/ctakes-3.0.0-incubating/README?view=markup - merge that resources folder contents into ctakes-dictionary-lookup/resources - I used launch configuration UIMA_CVD--clinical_documents_pipeline - Added ctakes-dictionary-lookup/resources to the classpath (I did it via the Classpath tab on the launch configuration) To test the UMLS aggregate, I added the following to the VM arguments on the Arguments tab of the Run configuration popup -Dctakes.umlsuser=jmasanz -Dctakes.umlspw=REDACTED In my opinion, we can wait to simplify these steps until next release. -- James Regards, James Masanz Senior Analyst/Programmer Department of Information Technology Phone: (507) 722-1727 [email protected] Mayo Clinic mayoclinic.org
