Try configuring Cygwin on the server end to use the "nontsec" option. This causes new files to be created with inherited NT permissions as opposed to the "Unix-Like" permissions. I know this has solved a lot of problems for our team.
Just set or modify the global environment variable "CYGWIN" to be include 'nontsec'. Ie: CYGWIN=nontsec
I've just about removed all of Cygwin. Not enough files left to run it.
I've listed all the files / directories left at http://www.espphotography.com/cygwin.html - none of these will delete.
Thanks.
Evan
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