Dag Sverre Seljebotn <da...@...> writes:
>
>
> >>> Hi,
> >>> I'm trying to run testlapack example from cython-notur09 on OS X 10.6.
> >>> First, while compiling I faced with following error
> >>> gcc -L/sw64/lib -bundle -L/sw64/lib/python2.6/config -lpython2.6
> >>> build/temp.macosx-10.4-i386-2.6/lapack.o
> >>> -L/Applications/development/sage//local/lib -llapack -lf77blas -lcblas
> >>> -latlas -o lapack.so -g
> >>> Undefined symbols:
> >>> "_clapack_dgesv", referenced from:
> >>> _dgesv in lapack.o
> >>> _dsolve in lapack.o
> >>> ld: symbol(s) not found
> >>> So I changed clapack_dgesw in lapack.pxd to dgesw and successfully
> >>> build it against SAGE (sage-4.2.1-OSX10.6-Intel-64bit-i386-Darwin.dmg)
> >>> but when I run testlapack.test() python froze, using 100% of CPU,
> >>> below is debuging info.
> >>>
> >>>
> >>>>>> tl.test()
> >>>>>>
> >>> test start
> >>> ^C
> >>> Program received signal SIGINT, Interrupt.
> >>> 0x00000001005280a4 in dgesv (__pyx_v_Order=CblasRowMajor, __pyx_v_N=3,
> >>> __pyx_v_NRHS=1, __pyx_v_A=0x7fff5fbfdda0, __pyx_v_lda=3,
> >>> __pyx_v_ipiv=0x7fff5fbfde10, __pyx_v_B=0x7fff5fbfddf0, __pyx_v_ldb=3)
> >>> at lapack.c:775
> >>> 775 static int dgesv(enum CBLAS_ORDER __pyx_v_Order, int __pyx_v_N,
> >>> int __pyx_v_NRHS, double *__pyx_v_A, int __pyx_v_lda, int
> >>> *__pyx_v_ipiv, double *__pyx_v_B, int __pyx_v_ldb) {
> >>> (gdb) exit
> >>>
>
> > In [3]: numpy.show_config()
> > lapack_opt_info:
> > extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
> > extra_compile_args = ['-msse3']
> > define_macros = [('NO_ATLAS_INFO', 3)]
> >
> > blas_opt_info:
> > extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
> > extra_compile_args = ['-msse3',
> > '-I/System/Library/Frameworks/vecLib.framework/Headers']
> > define_macros = [('NO_ATLAS_INFO', 3)]
> >
> >
> Hmm. I expected a line libraries=[...] in there. Try
> scipy.show_config()? I'm afraid I don't have a good answer, one just has
> to find the right set of libraries to link with.
>
> Dag Sverre
>
Here it is
In [2]: scipy.show_config()
amd_info:
libraries = ['amd']
library_dirs = ['/sw64/lib']
umfpack_info:
libraries = ['umfpack', 'amd']
library_dirs = ['/sw64/lib']
lapack_opt_info:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
extra_compile_args = ['-msse3']
define_macros = [('NO_ATLAS_INFO', 3)]
blas_opt_info:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
extra_compile_args = ['-msse3',
'-I/System/Library/Frameworks/vecLib.framework/Headers']
define_macros = [('NO_ATLAS_INFO', 3)]
As far, as I understand, numpy and scipy are build against Mac OS X Accelerated
framework, which includes lapack and blas libs, but as I've wrote recently, when
I'm building case a crash
Max
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